Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01941 ATGGGTTTTCCGGTGGGTTACGCCGAGGTCTTCTTCCCCAACCCCTTCCTTCACACACTAGCTTTCCTCGGCCTCCTCCGAAACTTCGTGTTCTTTCTCTTCCACCTCCTCGGACTCTCCGACTTCCTCGAAACTGAAGTCGCATGGCCGGACCCCCGCATCTCCGCCGCAACCGCCGCAACCGCCGCCGTCTCCAGGCCTCCCTCCGTGTCGGCGCTACTCATCCGGGATATCCTTCCCGTCGCCAAGTTCGGAGAGTCCGGAGAAAACTCCTGCGCCTGCGCCGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGCTGCATGCGGAACTGCAAACACATTTTCCACCGCGCCTGCGTGGACCGTTGGATCGATCACGATCAGAAAACATGCCCTCTATGTAGGACCCCCTTTGTGCCTGATGACATGCTTGATGATTATAATCAACGCCTCTGGGCTGCTTCTGGAATCAACGAGTTCTACTCCGATTACACTTCTTCCTTCTGA 513 0.5692 MGFPVGYAEVFFPNPFLHTLAFLGLLRNFVFFLFHLLGLSDFLETEVAWPDPRISAATAATAAVSRPPSVSALLIRDILPVAKFGESGENSCACAVCLFEFSEEEEIRCMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFYSDYTSSF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01941 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 29 156 - -
Viun10g01941 170 Pfam Ring finger domain 93 137 IPR001841 -
Viun10g01941 170 SMART ring_2 94 136 IPR001841 -
Viun10g01941 170 SUPERFAMILY RING/U-box 74 144 - -
Viun10g01941 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 142 IPR013083 -
Viun10g01941 170 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01941 Viun-Chr10 34116896 34117653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01941 1 169 C3H Transcription Factor Family AT1G63840 44.318 3.89e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01941 K16281 - gmx:100790975 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00857 5 5397451 5398236 Viun10g01941 10 34116896 34117653 PCT