Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01935 ATGGCTTCTCCATATCCCCCTCGCCGGCGATCGGGCTCCGACCACAGCAGAACGCCGGGAAGGGTGCCCCCTTCTCCTGGCTACGCCTCGTCTGAGCTCAGCACCTCCACAGTCTCCGAGCGCCAGAACCCCGTCGTCGCCGCCGCAAGGTCCTTCACCGGAATGTTCGCCGCGTGCTTCTCGCCCCCGGAATCCGACAACTCCAGGAGCCTCGGGGATTCCGAGGAGTTTAAGTCTTCTTCCACTGCATCGAATGGCTCAAGAGCTGGTTCCAGAGCTGGTAGTCAGAGAGGGCGTAACTCAAATGGAGGTATGAACATCAGTTCATACAACATAGTACAAAGGAAAGAACCTGGCATTGTGAAGTTCACCATGGAGGAAATCTTCCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTGCTGTGTACAAGGCAAAACTCTTGGATGGGACTGTTGTTTCAGTAAAGCGTGCTAAGAAGAGTCTGTATGAGAAACATTTGGGGGTGGAGTTCCAGAGCGAGATTCAAACACTATCCCGGGTGGAACATTTGAACTTGGTCAAGTTCTATGGATATTTGGAGCAAGGAGATGAAAGGATCATTGTTGTTGAGTATGTTCCCAATGGAACTCTCAGAGAACATTTAGATTGCATTCATGGGAGCGTTCTGGACCTTGCTCAACGTTTGGATGTAGCAATTGATGTTGCTCATGCTATCACATATCTTCATATGTATATAGATCATCCAATCATTCATAGAGACATAAAATCTTCAAACATTCTTCTGACTGAAAATTTTCGAGCTAAAGTAGCAGACTTTGGTTTTGCTAGACAAGCCGCAGACAGTGATTCTGGCATGACACATGTTTCCACCCAAGTCAAAGGAACAGCTGGTTACTTGGATCCTGAATACCTGAAAACTTATCAACTAACTGAAAAGAGTGATGTCTATTCATTTGGAGTTTTGCTTGTTGAACTTGTTACAGGTAGACGCCCCATTGAACCAAAATTTGAACTCAAGGAGCGAATAACAGCAAAGTGGGCTATGAAGAGGTTCATGGAGGAAGATGCTAACTCAGTGTTGGACCCAAGACTGGATCAGACTGCTGCAAACACTTTGGCTCTGCATAAGATTCTGGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAACAGACCTACCATGAAAAGATGTGCCGAGATCCTCTGGTCCATCCGCAAGGATTTCAGAGAGCAGTTATCAGCTTCAAACTTTCGCTCATTTTCCACAACTTCCCAAAGGAGCAGCTCACTCAGAGAGTGA 1326 0.4691 MASPYPPRRRSGSDHSRTPGRVPPSPGYASSELSTSTVSERQNPVVAAARSFTGMFAACFSPPESDNSRSLGDSEEFKSSSTASNGSRAGSRAGSQRGRNSNGGMNISSYNIVQRKEPGIVKFTMEEIFQVTRNFSPSFKIGQGGFGAVYKAKLLDGTVVSVKRAKKSLYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQGDERIIVVEYVPNGTLREHLDCIHGSVLDLAQRLDVAIDVAHAITYLHMYIDHPIIHRDIKSSNILLTENFRAKVADFGFARQAADSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELKERITAKWAMKRFMEEDANSVLDPRLDQTAANTLALHKILELALQCLAPRRQNRPTMKRCAEILWSIRKDFREQLSASNFRSFSTTSQRSSSLRE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01935 441 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Viun10g01935 441 MobiDBLite consensus disorder prediction 63 109 - -
Viun10g01935 441 MobiDBLite consensus disorder prediction 62 109 - -
Viun10g01935 441 SUPERFAMILY Protein kinase-like (PK-like) 110 413 IPR011009 -
Viun10g01935 441 MobiDBLite consensus disorder prediction 1 41 - -
Viun10g01935 441 SMART serkin_6 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01935 441 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 213 424 - -
Viun10g01935 441 Pfam Protein kinase domain 140 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01935 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Viun10g01935 441 ProSiteProfiles Protein kinase domain profile. 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01935 441 CDD STKc_IRAK 141 410 - -
Viun10g01935 441 Gene3D Phosphorylase Kinase; domain 1 97 212 - -
Viun10g01935 441 PANTHER OS01G0750732 PROTEIN 55 425 - -
Viun10g01935 441 Gene3D Transferase(Phosphotransferase) domain 1 213 435 - -
Viun10g01935 441 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 94 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01935 Viun-Chr10 34039346 34042886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01935 123 403 Receptor kinase-like Gene Family AT1G79620 47.018 4.44e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Viun10g01935 Pkinase 8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01935 - - gmx:100792034 706.442