Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01930 ATGTCCATGGCAGGGCGGTTGCAGTTCGACGGCGGTGTTCGCGGAGAAGATAGTGGTGGCATTGTGGGAGGCTCGAACGACGATTCTTTGTGCTGTTTCGAGAGGTTGTTTGCGGAGTTCTTTAGTGAGATCTGTGCGTTTAATTGCGTTTTGCATTATCCTCCAATGCTGTCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAATGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTCGGGTCCTCTGTTGAGTTGGTTTACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCGGAGTTTGGTGTGGTGGATAACAGGGATAAGTTTGGGAGGCGGTTAATGGAGTTGCAGGCTGAGGTGGAAGGGTTGTTTTCCGGTTGTGGCGATGAGAGGGTGGTTTTGGCCGGGGAGGATGTCGAGGGTGGTATGGATGAAGATGATCACAACTTAGATGGGAGGGAGTTATCCAGTGATAATGGGGTGAAAGGTAGTGGTGATGAAGGAGGTGAACATAAACAATGTTCTGATTCGGAGATGACGGACCATGACATGGATGAAGGGGTTCTTGGAAACTCGGATAAGGGAAATGATTTGATGGGAGGGAAGGAAGGGTTTGATGGAGGCAAAATGCCTGAAGAGCAGGCTGTGGATGTATCGGATGGGGCTAACAACAGTGGGACTGGAGTGGTGAGTGGAGGCGAGAAGTGTGACGACAGTGATGATAAGGGCTTGGTGTTGGATGCATCTGGTGGTAATAGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTTGGATTCATCTAGTGATGATAGTGATAATAGTCCTAGTCGTAAGAGAATGCGAGAGTCTGCAATGGATATGCTGAACTGGGTTACTGGTGTTGCAAAGAATCCTGGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTATACTAGTCAGGAGGTGTGGAAGCAGGTGCTGTTGTTTCGGGAAGGTGCTTTTTACAGAAGAGGTTCTGAGCATAGCAATGAACAACGTAGTTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCAAGTTGTGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTACAATCATTGCGAAGCTCTTCTGATTCATCTTTGGGAACTGAGAACAGAACACCAAGTTCTCACACTGAAGGTCAATCTGAGTTGCTTGATTCCTCAGACGCAAATTCAGGTCTTGACAAATGTTCAACAGTACGCATTCCTCTGGGGACAAATCATCAAGCCGAACTACCAGAATGGACTGGTGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGCAAATAGTAAATACAGGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCTCAGAAGAAGGTTCTATTGAGTGTGTAAGATTCCACATTTCAGAGAAAAGGGCCAAAGTTCAGCTGGAATTGGGTGATGCATTTTATGACTGGGACTTTGATCGGGTTGGTGAAGATGTTAGACTAATGTGGACAAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTTCGGTCAAACCCTCCATCACTTGAGAAATATTACTGGGACTATATTTTTAGGGCATTTCCTGATAAAAGCAGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAGCGCAGAGGATACCAGAATAGGCACACTCCCGATGACATTGATAGTGATGACAATGACGACGAAGCTGGACCATTGAGGAATGTTTTTGGACATCAGATGCAGAGTTCGCGAGGCTCCATCTTGTTAACCCCCAAAAAGTCACATAAAAAGGGAAAATAG 1980 0.4596 MSMAGRLQFDGGVRGEDSGGIVGGSNDDSLCCFERLFAEFFSEICAFNCVLHYPPMLSDGQDVDLYRLFLVVRGKGGYDAVCNGKLWDSVGEESGMGVSVGSSVELVYSRYLSALDSWMKKVAESKVSPEFGVVDNRDKFGRRLMELQAEVEGLFSGCGDERVVLAGEDVEGGMDEDDHNLDGRELSSDNGVKGSGDEGGEHKQCSDSEMTDHDMDEGVLGNSDKGNDLMGGKEGFDGGKMPEEQAVDVSDGANNSGTGVVSGGEKCDDSDDKGLVLDASGGNSDGDSSGHKRKREGSVLDSSSDDSDNSPSRKRMRESAMDMLNWVTGVAKNPGDPEVGSIPEKSKWKSYTSQEVWKQVLLFREGAFYRRGSEHSNEQRSWQNQKMHPCLYEDQVVTNYNLRDRLKCDKKLQSLRSSSDSSLGTENRTPSSHTEGQSELLDSSDANSGLDKCSTVRIPLGTNHQAELPEWTGVTSESDSKWLGTRIWPQQIVNTGLIERDPIGKGRQGSCGCSEEGSIECVRFHISEKRAKVQLELGDAFYDWDFDRVGEDVRLMWTKEEEKKFEDVVRSNPPSLEKYYWDYIFRAFPDKSRADLVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDDEAGPLRNVFGHQMQSSRGSILLTPKKSHKKGK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01930 659 Gene3D - 33 129 IPR036431 GO:0003677
Viun10g01930 659 MobiDBLite consensus disorder prediction 171 316 - -
Viun10g01930 659 MobiDBLite consensus disorder prediction 287 316 - -
Viun10g01930 659 SMART ELM2_2 458 508 IPR000949 -
Viun10g01930 659 ProSiteProfiles ARID domain profile. 27 120 IPR001606 GO:0003677
Viun10g01930 659 MobiDBLite consensus disorder prediction 614 659 - -
Viun10g01930 659 MobiDBLite consensus disorder prediction 417 448 - -
Viun10g01930 659 Pfam ARID/BRIGHT DNA binding domain 53 114 IPR001606 GO:0003677
Viun10g01930 659 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 27 656 - -
Viun10g01930 659 SUPERFAMILY ARID-like 47 123 IPR036431 GO:0003677
Viun10g01930 659 SMART bright_3 35 121 IPR001606 GO:0003677
Viun10g01930 659 CDD ARID 33 116 - -
Viun10g01930 659 CDD SANT 557 604 IPR001005 -
Viun10g01930 659 SMART ARID_2 31 116 - -
Viun10g01930 659 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01930 Viun-Chr10 33981810 33986238 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun10g01930 ARID 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01930 - - pvu:PHAVU_010G100300g 935.636