Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01929 ATGCTGTCTGATGGGCAGGACGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAATGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGAGTGAGTGTCGGGTCCTCTGTTGAGTTGGTTTACAGTAGGTACTTGAGTGCTTTGGATTCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCGGAGTTTGGTGTGGTGGATAACAGGGATAAGTTTGGGAGGCGGTTAATGGAGTTGCAGGCTGAGGTGGAAGGGTTGTTTTCCGGTTGTGGCGATGAGAGGGTGGTTTTGGCCGGGGAGGATGTCGAGGGTGGTATGGATGAAGATGATCACAACTTAGATGGGAGGGAGTTATCCAGTGATAATGGGGTGAAAGGTAGTGGTGATGAAGGAGGTGAACATAAACAATGTTCTGATTCGGAGATGACGGACCATGACATGGATGAAGGGGTTCTTGGAAACTCGGATAAGGGAAATGATTTGATGGGAGGGAAGGAAGGGTTTGATGGAGGCAAAATGCCTGAAGAGCAGGCTGTGGATGTATCGGATGGGGCTAACAACAGTGGGACTGGAGTGGTGAGTGGAGGCGAGAAGTGTGACGACAGTGATGATAAGGGCTTGGTGTTGGATGCATCTGGTGGTAATAGTGATGGTGATAGTTCTGGTCACAAGAGGAAGAGAGAGGGGTCTGTGTTGGATTCATCTAGTGATGATAGTGATAATAGTCCTAGTCGTAAGAGAATGCGAGAGTCTGCAATGGATATGCTGAACTGGGTTACTGGTGTTGCAAAGAATCCTGGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTATACTAGTCAGGAGGTGTGGAAGCAGGTGCTGTTGTTTCGGGAAGGTGCTTTTTACAGAAGAGGTTCTGAGCATAGCAATGAACAACGTAGTTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCAAGTTGTGACAAACTACAATCTCAGAGACAGGTTGAAATGTGACAAGAAGCTACAATCATTGCGAAGCTCTTCTGATTCATCTTTGGGAACTGAGAACAGAACACCAAGTTCTCACACTGAAGGTCAATCTGAGTTGCTTGATTCCTCAGACGCAAATTCAGGTCTTGACAAATGTTCAACAGTACGCATTCCTCTGGGGACAAATCATCAAGCCGAACTACCAGAATGGACTGGTGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACAGCAAATAGTAAATACAGGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGGTTCATGTGGCTGCTCAGAAGAAGGTTCTATTGAGTGTGTAAGATTCCACATTTCAGAGAAAAGGGCCAAAGTTCAGCTGGAATTGGGTGATGCATTTTATGACTGGGACTTTGATCGGGTTGGTGAAGATGTTAGACTAATGTGGACAAAAGAAGAAGAGAAAAAATTTGAGGATGTGGTTCGGTCAAACCCTCCATCACTTGAGAAATATTACTGGGACTATATTTTTAGGGCATTTCCTGATAAAAGCAGGGCAGATTTAGTTAGCTACTACTTCAATGTCTTTATGTTGCAGCGCAGAGGATACCAGAATAGGCACACTCCCGATGACATTGATAGTGATGACAATGACGACGAAGCTGGACCATTGAGGAATGTTTTTGGACATCAGATGCAGAGTTCGCGAGGCTCCATCTTGTTAACCCCCAAAAAGTCACATAAAAAGGGAAAATAG 1815 0.4551 MLSDGQDVDLYRLFLVVRGKGGYDAVCNGKLWDSVGEESGMGVSVGSSVELVYSRYLSALDSWMKKVAESKVSPEFGVVDNRDKFGRRLMELQAEVEGLFSGCGDERVVLAGEDVEGGMDEDDHNLDGRELSSDNGVKGSGDEGGEHKQCSDSEMTDHDMDEGVLGNSDKGNDLMGGKEGFDGGKMPEEQAVDVSDGANNSGTGVVSGGEKCDDSDDKGLVLDASGGNSDGDSSGHKRKREGSVLDSSSDDSDNSPSRKRMRESAMDMLNWVTGVAKNPGDPEVGSIPEKSKWKSYTSQEVWKQVLLFREGAFYRRGSEHSNEQRSWQNQKMHPCLYEDQVVTNYNLRDRLKCDKKLQSLRSSSDSSLGTENRTPSSHTEGQSELLDSSDANSGLDKCSTVRIPLGTNHQAELPEWTGVTSESDSKWLGTRIWPQQIVNTGLIERDPIGKGRQGSCGCSEEGSIECVRFHISEKRAKVQLELGDAFYDWDFDRVGEDVRLMWTKEEEKKFEDVVRSNPPSLEKYYWDYIFRAFPDKSRADLVSYYFNVFMLQRRGYQNRHTPDDIDSDDNDDEAGPLRNVFGHQMQSSRGSILLTPKKSHKKGK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01929 604 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
Viun10g01929 604 CDD SANT 502 549 IPR001005 -
Viun10g01929 604 MobiDBLite consensus disorder prediction 559 604 - -
Viun10g01929 604 CDD ARID 4 61 - -
Viun10g01929 604 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Viun10g01929 604 Gene3D - 1 74 IPR036431 GO:0003677
Viun10g01929 604 SMART ELM2_2 403 453 IPR000949 -
Viun10g01929 604 SMART bright_3 1 66 IPR001606 GO:0003677
Viun10g01929 604 MobiDBLite consensus disorder prediction 140 166 - -
Viun10g01929 604 SUPERFAMILY ARID-like 4 68 IPR036431 GO:0003677
Viun10g01929 604 MobiDBLite consensus disorder prediction 116 261 - -
Viun10g01929 604 MobiDBLite consensus disorder prediction 232 261 - -
Viun10g01929 604 MobiDBLite consensus disorder prediction 362 393 - -
Viun10g01929 604 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01929 Viun-Chr10 33981810 33986450 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun10g01929 ARID 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01929 - - pvu:PHAVU_010G100300g 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00870 5 5452590 5457065 Viun10g01929 10 33981810 33986450 PCT