Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01913 ATGAGCATGGCTGTGGTGAGTCCTATGCCTGCAACTGCACCACCACAGATGAATCCTACGAGCAAGTTTCGTGATATTGGGGTTCCTGGAATCATGAGTAGTAGGAGAGAAATTGTGAGTGAGCCTAGTTCTCCAAGCATGCTTAATGATACACTCTATGTTGCTGTGGCAAAAGATGTGAAAGACAGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCTATGATGGGTGCTAAATTTCCTGCAAGTGCACTGAGAGAACAGGAAGTTCAAGATTATCATGAAAGGGAAAGGCAAAAAATTCCGAAGACTATGGATGCCTATCTTTATATCTGTCAAAAAATGGGGGTGAGGGCAGACAAAATACTCATTGAAATGGATTGTGTAGAAAAAGGGATTGTAGAGCTCATCCACCAGTATGGCATACATAGGCTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGGTATCCCTCAAATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCTTGTCATGTACAGTTTGTCTGCAATGGGTACCTCATACACACAAGATTGGATAGAGGGAATGTAGAGGTTGTATCTCCTTCTGTGCTGCAAATGGAAAACTCTGAAGTTGGGCATTCACCTAACATTGGATCCCCATCCTCAGTGGCAGGGCAAAATCGTTGGAGAAAACTAACTAATCCCGGACAAGAGTTATTTCGTAGAGTTAGGACTATCAATGGTGCACATCGGAGGAGAACTGGATCTGTTTCTTCTTTAGAAGGGTACTTAACTCCTCAGAGAAAGTTTGGTAAAGAAGCAAGTTGTGATGAGTTAGATGAGCAGTCACGGGGGAGTCCTTCAGTATTCTCAATGTGCTTTGAGAGTTGTTCGGTTGATCCAGAATTGATTCCGGAATTGAATGACTTTTCTCTGAATAATAAGGATCTTCATTCACCATCACCAAGTGTACTGGATGGAGGAATGGATGATGCTCTCTATGGTCAACTTGAACAGGCAATGGCCGAGGCTTGGAATGTTAGGCAAGATGCATATCAAGAAACTGTTAGGCGTATGAAAGCAGAAAAAGAAGCCATTGATGCTATACGCAAGGCTAAAGCCACTGAAAACTTGTATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGTTAATATGAAGAGTCACATAAACAAAGTTAATGAGGAACTCCAACTTGCCTTAGATCAGAAATTATCTCTAGAGAATCGAATTGCATCTACTGAACTTAATATAAAGGAGTTGGAGCAGAAGAATATATCTGCTGATGAGTTATCTCAAAAGTACATGGATGAACTAGATGAGTTACAAATGCAACTTGATAATGCGTTGAGAGAGGCTGAGGAGTTAAGGAGAAAACAAGGGGAAGCCTCAAGCACTCACTGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTTAAGATCGGACAAGGTGGATACGGAAGTATATTTAAAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGACAGTACCCAAGGTCCAGAGGAGTTTCAACAAGAGGTTGAAATATTGAGCAGGTTGAGGCACCCCAATCTTGTGACACTTATAGGATCATGCCCAGAATCCTGGACCCTTGTCTATGAGTATTTACACAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACACACCTCCGTTGTCATGGCAAACTCGAATTCGCATAGCTGCAGAACTCTGCTCGGCTCTCATCTTTCTTCAATCAAGTAAACCTCACAGCATAGCACATGGTGATTTAAAACCAGGCAACATTCTCCTTGATTCAAACCTTGTAAGCAAGCTCAGTGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCAGTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTACTTCTGGTGAACTCACACCAAAGTCAGATGTTTATTCCTTTGGAGTCATTCTATTGAGATTGATCACTGGGAAACCTGCTCTGGGAATAAAAAATGAAGTGGAATATGCATTACATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGACTGGCCATTTATGCTAGCTGAAGAGTTAGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAACAGAAAGAACAGACCAGATTTTTATCCAGAGGTTTGGAGAATACTTGAACCAATGAGGGCTTCTTGTGAAGGCATTCAACTGGGTTCTCAAGGAAAGTGCCAACCTCCACCATATTTTATTTGTCCAATCTCTCTGGAAGTGATGCAAGAACCACAAGTGGCTGCAGATGGTTTTACTTATGAAGCTTGGGCTATACGTGAATGGCTGGAAAGTGGTCGTGACACTTCACCAAGGACAAAGTCTAAGTTAGCACATCACAACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCATTGA 2640 0.417 MSMAVVSPMPATAPPQMNPTSKFRDIGVPGIMSSRREIVSEPSSPSMLNDTLYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPMMGAKFPASALREQEVQDYHERERQKIPKTMDAYLYICQKMGVRADKILIEMDCVEKGIVELIHQYGIHRLVMGAASDKYHSRRMVSLKSKKAIYVCEQAPASCHVQFVCNGYLIHTRLDRGNVEVVSPSVLQMENSEVGHSPNIGSPSSVAGQNRWRKLTNPGQELFRRVRTINGAHRRRTGSVSSLEGYLTPQRKFGKEASCDELDEQSRGSPSVFSMCFESCSVDPELIPELNDFSLNNKDLHSPSPSVLDGGMDDALYGQLEQAMAEAWNVRQDAYQETVRRMKAEKEAIDAIRKAKATENLYQEELKLRKEQEEEVQKANEELVNMKSHINKVNEELQLALDQKLSLENRIASTELNIKELEQKNISADELSQKYMDELDELQMQLDNALREAEELRRKQGEASSTHWLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSTQGPEEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLHNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDSNLVSKLSDFGICRILSCQEGSSSSSTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGVILLRLITGKPALGIKNEVEYALHSRKLKSILDPLAGDWPFMLAEELVRLALRCCEMNRKNRPDFYPEVWRILEPMRASCEGIQLGSQGKCQPPPYFICPISLEVMQEPQVAADGFTYEAWAIREWLESGRDTSPRTKSKLAHHNLIPNHSLRHAIQDWLQTH 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01913 879 FunFam receptor-like protein kinase FERONIA 488 596 - -
Viun10g01913 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 879 IPR013083 -
Viun10g01913 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Viun10g01913 879 Pfam U-box domain 810 879 IPR003613 GO:0004842|GO:0016567
Viun10g01913 879 MobiDBLite consensus disorder prediction 1 23 - -
Viun10g01913 879 PANTHER OS02G0152300 PROTEIN 52 874 - -
Viun10g01913 879 Coils Coil 391 503 - -
Viun10g01913 879 SUPERFAMILY Protein kinase-like (PK-like) 500 782 IPR011009 -
Viun10g01913 879 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 63 174 - -
Viun10g01913 879 ProSitePatterns Protein kinases ATP-binding region signature. 530 551 IPR017441 GO:0005524
Viun10g01913 879 Gene3D Transferase(Phosphotransferase) domain 1 597 797 - -
Viun10g01913 879 ProSiteProfiles U-box domain profile. 808 879 IPR003613 GO:0004842|GO:0016567
Viun10g01913 879 SMART Ubox_2 812 875 IPR003613 GO:0004842|GO:0016567
Viun10g01913 879 CDD RING-Ubox_WDSUB1-like 810 865 - -
Viun10g01913 879 SUPERFAMILY RING/U-box 805 879 - -
Viun10g01913 879 ProSiteProfiles Protein kinase domain profile. 524 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01913 879 Pfam Protein kinase domain 528 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01913 879 Gene3D Phosphorylase Kinase; domain 1 494 596 - -
Viun10g01913 879 SMART serkin_6 524 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01913 879 Gene3D HUPs 47 169 IPR014729 -
Viun10g01913 879 CDD STK_N 51 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01913 Viun-Chr10 33845448 33850587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01913 3 879 U-box Gene Family AT2G45910 51.288 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun10g01913 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01913 - - var:108321203 1520.37