Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01912 ATGAGCATGGCTGTGGTGAGTCCTATGCCTGCAACTGCACCACCACAGATGAATCCTACGAGCAAGTTTCGTGATATTGGGGTTCCTGGAATCATGAGTAGTAGGAGAGAAATTGTGAGTGAGCCTAGTTCTCCAAGCATGCTTAATGATACACTCTATGTTGCTGTGGCAAAAGATGTGAAAGACAGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCTATGATGGGTGCTAAATTTCCTGCAAGTGCACTGAGAGAACAGGAAGTTCAAGATTATCATGAAAGGGAAAGGCAAAAAATTCCGAAGACTATGGATGCCTATCTTTATATCTGTCAAAAAATGGGGGTGAGGGCAGACAAAATACTCATTGAAATGGATTGTGTAGAAAAAGGGATTGTAGAGCTCATCCACCAGTATGGCATACATAGGCTTGTAATGGGAGCAGCATCTGATAAGTACCATTCTAGGAGAATGGTATCCCTCAAATCTAAGAAAGCTATATATGTATGTGAACAAGCTCCAGCTTCTTGTCATGTACAGTTTGTCTGCAATGGGTACCTCATACACACAAGGGATTGCAGATTGGATAGAGGGAATGTAGAGGTTGTATCTCCTTCTGTGCTGCAAATGGAAAACTCTGAAGTTGGGCATTCACCTAACATTGGATCCCCATCCTCAGTGGCAGGGCAAAATCGTTGGAGAAAACTAACTAATCCCGGACAAGAGTTATTTCGTAGAGTTAGGACTATCAATGGTGCACATCGGAGGAGAACTGGATCTGTTTCTTCTTTAGAAGGGTACTTAACTCCTCAGAGAAAGTTTGGTAAAGAAGCAAGTTGTGATGAGTTAGATGAGCAGTCACGGGGGAGTCCTTCAGTATTCTCAATGTGCTTTGAGAGTTGTTCGGTTGATCCAGAATTGATTCCGGAATTGAATGACTTTTCTCTGAATAATAAGGATCTTCATTCACCATCACCAAGTGTACTGGATGGAGGAATGGATGATGCTCTCTATGGTCAACTTGAACAGGCAATGGCCGAGGCTTGGAATGTTAGGCAAGATGCATATCAAGAAACTGTTAGGCGTATGAAAGCAGAAAAAGAAGCCATTGATGCTATACGCAAGGCTAAAGCCACTGAAAACTTGTATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGAAGTACAGAAAGCAAATGAAGAACTTGTTAATATGAAGAGTCACATAAACAAAGTTAATGAGGAACTCCAACTTGCCTTAGATCAGAAATTATCTCTAGAGAATCGAATTGCATCTACTGAACTTAATATAAAGGAGTTGGAGCAGAAGAATATATCTGCTGATGAGTTATCTCAAAAGTACATGGATGAACTAGATGAGTTACAAATGCAACTTGATAATGCGTTGAGAGAGGCTGAGGAGTTAAGGAGAAAACAAGGGGAAGCCTCAAGCACTCACTGGCTTCAACCCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGAAACTTCAATCCATCCCTTAAGATCGGACAAGGTGGATACGGAAGTATATTTAAAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATGTTGAGTCCTGACAGTACCCAAGGTCCAGAGGAGTTTCAACAAGAGGTTGAAATATTGAGCAGGTTGAGGCACCCCAATCTTGTGACACTTATAGGATCATGCCCAGAATCCTGGACCCTTGTCTATGAGTATTTACACAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACACACCTCCGTTGTCATGGCAAACTCGAATTCGCATAGCTGCAGAACTCTGCTCGGCTCTCATCTTTCTTCAATCAAGTAAACCTCACAGCATAGCACATGGTGATTTAAAACCAGGCAACATTCTCCTTGATTCAAACCTTGTAAGCAAGCTCAGTGACTTTGGAATCTGTCGTATATTATCTTGTCAAGAGGGTTCAAGTAGCAGCAGTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCTGAATTCCTTACTTCTGGTGAACTCACACCAAAGTCAGATGTTTATTCCTTTGGAGTCATTCTATTGAGATTGATCACTGGGAAACCTGCTCTGGGAATAAAAAATGAAGTGGAATATGCATTACATAGTAGAAAGTTGAAATCCATCTTGGATCCATTGGCTGGAGACTGGCCATTTATGCTAGCTGAAGAGTTAGTTCGCTTGGCTTTGAGGTGTTGTGAGATGAACAGAAAGAACAGACCAGATTTTTATCCAGAGGTTTGGAGAATACTTGAACCAATGAGGGCTTCTTGTGAAGGCATTCAACTGGGTTCTCAAGGAAAGTGCCAACCTCCACCATATTTTATTTGTCCAATCTCTCTGGAAGTGATGCAAGAACCACAAGTGGCTGCAGATGGTTTTACTTATGAAGCTTGGGCTATACGTGAATGGCTGGAAAGTGGTCGTGACACTTCACCAAGGACAAAGTCTAAGTTAGCACATCACAACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCAGGACTGGCTTCAAACTCATTGA 2649 0.4175 MSMAVVSPMPATAPPQMNPTSKFRDIGVPGIMSSRREIVSEPSSPSMLNDTLYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPMMGAKFPASALREQEVQDYHERERQKIPKTMDAYLYICQKMGVRADKILIEMDCVEKGIVELIHQYGIHRLVMGAASDKYHSRRMVSLKSKKAIYVCEQAPASCHVQFVCNGYLIHTRDCRLDRGNVEVVSPSVLQMENSEVGHSPNIGSPSSVAGQNRWRKLTNPGQELFRRVRTINGAHRRRTGSVSSLEGYLTPQRKFGKEASCDELDEQSRGSPSVFSMCFESCSVDPELIPELNDFSLNNKDLHSPSPSVLDGGMDDALYGQLEQAMAEAWNVRQDAYQETVRRMKAEKEAIDAIRKAKATENLYQEELKLRKEQEEEVQKANEELVNMKSHINKVNEELQLALDQKLSLENRIASTELNIKELEQKNISADELSQKYMDELDELQMQLDNALREAEELRRKQGEASSTHWLQPFSEFSFSEIKEATRNFNPSLKIGQGGYGSIFKGILRHTEVAIKMLSPDSTQGPEEFQQEVEILSRLRHPNLVTLIGSCPESWTLVYEYLHNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLQSSKPHSIAHGDLKPGNILLDSNLVSKLSDFGICRILSCQEGSSSSSTQFWRTVPKGTFVYVDPEFLTSGELTPKSDVYSFGVILLRLITGKPALGIKNEVEYALHSRKLKSILDPLAGDWPFMLAEELVRLALRCCEMNRKNRPDFYPEVWRILEPMRASCEGIQLGSQGKCQPPPYFICPISLEVMQEPQVAADGFTYEAWAIREWLESGRDTSPRTKSKLAHHNLIPNHSLRHAIQDWLQTH 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01912 882 Gene3D Transferase(Phosphotransferase) domain 1 600 803 - -
Viun10g01912 882 FunFam receptor-like protein kinase FERONIA 491 599 - -
Viun10g01912 882 ProSitePatterns Protein kinases ATP-binding region signature. 533 554 IPR017441 GO:0005524
Viun10g01912 882 PANTHER OS02G0152300 PROTEIN 52 877 - -
Viun10g01912 882 SUPERFAMILY Protein kinase-like (PK-like) 503 785 IPR011009 -
Viun10g01912 882 MobiDBLite consensus disorder prediction 1 23 - -
Viun10g01912 882 Gene3D Phosphorylase Kinase; domain 1 497 599 - -
Viun10g01912 882 Coils Coil 394 506 - -
Viun10g01912 882 ProSiteProfiles Protein kinase domain profile. 527 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01912 882 CDD RING-Ubox_WDSUB1-like 813 868 - -
Viun10g01912 882 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 63 174 - -
Viun10g01912 882 SMART serkin_6 527 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01912 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Viun10g01912 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 882 IPR013083 -
Viun10g01912 882 Pfam Protein kinase domain 531 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01912 882 Pfam U-box domain 813 882 IPR003613 GO:0004842|GO:0016567
Viun10g01912 882 ProSiteProfiles U-box domain profile. 811 882 IPR003613 GO:0004842|GO:0016567
Viun10g01912 882 SMART Ubox_2 815 878 IPR003613 GO:0004842|GO:0016567
Viun10g01912 882 Gene3D HUPs 47 169 IPR014729 -
Viun10g01912 882 SUPERFAMILY RING/U-box 808 882 - -
Viun10g01912 882 CDD STK_N 51 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01912 Viun-Chr10 33845448 33850587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01912 3 882 U-box Gene Family AT2G45910 51.288 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun10g01912 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01912 - - var:108321203 1533.47