Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01874 ATGGATCGAGGGGACCAAATGACATTACCTGGCTCTGCATCTTACTACATGCAGAGAGGGATACCTGGTGCTGGAACTCAATCTGAACTGCACAACTCGCCTAATATTAGACCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTAACATTGGATCCACATTACCATTGGAGTCTTCAGGAATTTCATCTCCATGTGTCAATGTGAGTGTTCCTTCTGGTGCTGTGCCAGGGGAATCTGTCAAAAGGAAGCGAGGAAGGCCTCGAAAATACGGGCCGGACGGAACTGTGTCGTTGGCATTGACTCCAACACCAGCAAGTCATCCTGGAGCCCTGGCACAAGGCCAGAAACGAGGTAGGGGGCGCCCACCAGGATCAGGGAAGAAACAACAGTTGGCTTCTCTTGGTGAACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATTACCATAGCAGTTGGAGAGGACGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGACCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACTCTTCGTCAACCTTCAACATCAGGTGGCACAGTCACATACGAGGGACGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGATGGTGGTGGTGGCTCGCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGCCGTGTCATTGGTGGAGGAGTTGGCGGAGTTCTTATTGCTGCAAGTCCAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATCAAGAAAAAAGAACCTTCTGCTGAAGTGGCAGAAGTTGCTATAGAGACTGATCATCAGACAGTTCATAATCCAGTTGCAATGAATAGCCTCTCGCCAAATCAAAATCTTACTCCAACCTCATCTTTGAGTCCGTGGCCAGCATCACGACCGTTGGATATGCGCAACTCTCATATTGACATTGATTTAATGCGCGGGTGA 1029 0.4781 MDRGDQMTLPGSASYYMQRGIPGAGTQSELHNSPNIRPLSNPNLPFQSSIGGGGNIGSTLPLESSGISSPCVNVSVPSGAVPGESVKRKRGRPRKYGPDGTVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADGGGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIAASPVQVIVGSFTWGGSKTKIKKKEPSAEVAEVAIETDHQTVHNPVAMNSLSPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01874 342 Gene3D - 154 299 - -
Viun10g01874 342 MobiDBLite consensus disorder prediction 305 325 - -
Viun10g01874 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 271 - -
Viun10g01874 342 ProSiteProfiles PPC domain profile profile. 148 292 IPR005175 -
Viun10g01874 342 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Viun10g01874 342 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Viun10g01874 342 MobiDBLite consensus disorder prediction 73 137 - -
Viun10g01874 342 CDD DUF296 153 268 IPR005175 -
Viun10g01874 342 MobiDBLite consensus disorder prediction 25 57 - -
Viun10g01874 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 317 IPR039605 GO:0003680
Viun10g01874 342 FunFam AT-hook motif nuclear-localized protein 1-like 154 286 - -
Viun10g01874 342 MobiDBLite consensus disorder prediction 1 57 - -
Viun10g01874 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 269 IPR005175 -
Viun10g01874 342 MobiDBLite consensus disorder prediction 305 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01874 Viun-Chr10 33569944 33576497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01874 1 342 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.552 6.25e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01874 - - gmx:100799791 587.415