Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01850 ATGTCTTTCACTGGAACTCTTGACAAATGCAAGGCATGCGACAAGACTGTCTATGTGGTTGACTTGTTAACCCTTGAAGGCACTCCTTATCATAAGAACTGCTTCAAATGCAGCCACTGCAAGGGATGTCTCACGATGTGCACATACTCTTCAATGGATGGAGTTCTCTACTGCAAGACGCATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCACAAAGTCTGCTGACAAACAAACCGACATAAACAGAGCCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACTCTGGACAAATGTGCAGTATGCTCAAAAACAGTTTATCCTCTTGAAAAGGTGACACTAGAAGGGGAATGCTTCCACAAGACTTGTTTCAGGTGTGCTCATGGAGGGTGCACTCTGACACATTCAAACTATGCTGCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTCCAACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGAACCGGTTCTTCTACACCTCCTGAGCCTCTATTTGAGGAGTCATCACATCCACCAGCAGCATCTGAGGAACCTGAAGTAGTGGAAGATGAAGAAAAAAGTGACGAAAAGAGTGAAGGAAAAAGTGAAGAAAAAAGTGAAGAAAAAAGGGAAGAAAAAGAAGAAGATGAAGAAGAAAGGTCTTGA 714 0.4412 MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGCLTMCTYSSMDGVLYCKTHFEQLFKESGNFSKNFTKSADKQTDINRAPSKLSSMFSGTLDKCAVCSKTVYPLEKVTLEGECFHKTCFRCAHGGCTLTHSNYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEESSHPPAASEEPEVVEDEEKSDEKSEGKSEEKSEEKREEKEEDEEERS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01850 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Viun10g01850 237 SMART lim_4 103 155 IPR001781 -
Viun10g01850 237 SMART lim_4 9 61 IPR001781 -
Viun10g01850 237 FunFam LIM domain and actin-binding 1 98 168 - -
Viun10g01850 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Viun10g01850 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Viun10g01850 237 MobiDBLite consensus disorder prediction 175 237 - -
Viun10g01850 237 Coils Coil 215 235 - -
Viun10g01850 237 Gene3D Cysteine Rich Protein 101 168 - -
Viun10g01850 237 PANTHER OS06G0237300 PROTEIN 6 102 - -
Viun10g01850 237 MobiDBLite consensus disorder prediction 210 225 - -
Viun10g01850 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Viun10g01850 237 FunFam LIM domain and actin-binding 1 4 74 - -
Viun10g01850 237 Gene3D Cysteine Rich Protein 5 100 - -
Viun10g01850 237 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Viun10g01850 237 Pfam LIM domain 10 65 IPR001781 -
Viun10g01850 237 Pfam LIM domain 104 159 IPR001781 -
Viun10g01850 237 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01850 Viun-Chr10 33429699 33431942 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Viun10g01850 LIM 4.6e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01850 - K09377 gmx:100305845 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01850 10 33429699 33431942 Viun10g01850 10 33429699 33431942 ECH
Viun5g00948 5 6028656 6030921 Viun10g01850 10 33429699 33431942 PCT