LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g01849	ATGTCTTTCACTGGAACTCTTGACAAATGCAAGGCATGCGACAAGACTGTCTATGTGGTTGACTTGTTAACCCTTGAAGGCACTCCTTATCATAAGAACTGCTTCAAATGCAGCCACTGCAAGGGATGTCTCACGATGTGCACATACTCTTCAATGGATGGAGTTCTCTACTGCAAGACGCATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCACAAAGTCTGCTGACAAACAAACCGACATACAGAACAGAGCCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACTCTGGACAAATGTGCAGTATGCTCAAAAACAGTTTATCCTCTTGAAAAGGTGACACTAGAAGGGGAATGCTTCCACAAGACTTGTTTCAGGTGTGCTCATGGAGGGTGCACTCTGACACATTCAAACTATGCTGCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTCCAACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGAACCGGTTCTTCTACACCTCCTGAGCCTCTATTTGAGGAGTCATCACATCCACCAGCAGCATCTGAGGAACCTGAAGTAGTGGAAGATGAAGAAAAAAGTGACGAAAAGAGTGAAGGAAAAAGTGAAGAAAAAAGTGAAGAAAAAAGGGAAGAAAAAGAAGAAGATGAAGAAGAAAGGTCTTGA	717	0.4421	MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGCLTMCTYSSMDGVLYCKTHFEQLFKESGNFSKNFTKSADKQTDIQNRAPSKLSSMFSGTLDKCAVCSKTVYPLEKVTLEGECFHKTCFRCAHGGCTLTHSNYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEESSHPPAASEEPEVVEDEEKSDEKSEGKSEEKSEEKREEKEEDEEERS	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g01849	238	PANTHER	OS06G0237300 PROTEIN	6	102	-	-
	Viun10g01849	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	131	170	-	-
	Viun10g01849	238	FunFam	LIM domain and actin-binding 1	4	74	-	-
	Viun10g01849	238	Pfam	LIM domain	105	160	IPR001781	-
	Viun10g01849	238	Pfam	LIM domain	10	65	IPR001781	-
	Viun10g01849	238	MobiDBLite	consensus disorder prediction	176	238	-	-
	Viun10g01849	238	MobiDBLite	consensus disorder prediction	211	226	-	-
	Viun10g01849	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	36	76	-	-
	Viun10g01849	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	35	-	-
	Viun10g01849	238	FunFam	LIM domain and actin-binding 1	99	169	-	-
	Viun10g01849	238	Gene3D	Cysteine Rich Protein	5	72	-	-
	Viun10g01849	238	Coils	Coil	216	236	-	-
	Viun10g01849	238	Gene3D	Cysteine Rich Protein	101	169	-	-
	Viun10g01849	238	ProSiteProfiles	LIM domain profile.	103	163	IPR001781	-
	Viun10g01849	238	ProSiteProfiles	LIM domain profile.	8	68	IPR001781	-
	Viun10g01849	238	SMART	lim_4	104	156	IPR001781	-
	Viun10g01849	238	SMART	lim_4	9	61	IPR001781	-
	Viun10g01849	238	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	97	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g01849	Viun-Chr10	33429699	33431945	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Viun10g01849		LIM	4.7e-09	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g01849	-		K09377	gmx:100305845	361.303