Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01841 ATGAACAATCAGTTTCAAAGCAATGAGTTTCCTCCATCATCCTCGTCTTCTCCACCTCTAGCATCACCTACTCAATCACCATGCTTACCAACTGCAAGTTACAGGAGATGGAGTGAAGAAGAACACAAGTTGTTCTTGATAGGACTCGAGAAATACAAAAAGGGACGATGGACGAATATTTCAAGGTATGTGGTGAAAACCAGGACTCCAGCACAAGTTGCAAGCCATGCTCAAAATTACTACAAACATTTGGCCGCACTCAATAAAGACAAAAGAAAAAGTATTGACGACGTGAAAACATTGGACAACGAGGATGTCTCTCCTCCTCATGATCAAGTTCATTTGCAAAATGACAATGTCTATGTTCCAGTTGATTTGCAAAACGATGAAGTTCATCTGCAAAATGACGACGTTTATGTTCGAGATTCCCAAGTTGATGTGCAAAATGATGAAGTTCATCCACAAAATGACGATGTCTATGTTCCAGATTACCAAGTTGACCAACCTATTTTTGCTGATCTGGACTTCTTAAACGTAATGATAGATACGGTCTAA 555 0.3964 MNNQFQSNEFPPSSSSSPPLASPTQSPCLPTASYRRWSEEEHKLFLIGLEKYKKGRWTNISRYVVKTRTPAQVASHAQNYYKHLAALNKDKRKSIDDVKTLDNEDVSPPHDQVHLQNDNVYVPVDLQNDEVHLQNDDVYVRDSQVDVQNDEVHPQNDDVYVPDYQVDQPIFADLDFLNVMIDTV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01841 184 ProSiteProfiles SANT domain profile. 36 85 IPR017884 -
Viun10g01841 184 SMART sant 33 83 IPR001005 -
Viun10g01841 184 Pfam Myb-like DNA-binding domain 36 80 IPR001005 -
Viun10g01841 184 CDD SANT 36 80 IPR001005 -
Viun10g01841 184 Coils Coil 84 104 - -
Viun10g01841 184 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 85 IPR017930 -
Viun10g01841 184 MobiDBLite consensus disorder prediction 1 28 - -
Viun10g01841 184 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Viun10g01841 184 SUPERFAMILY Homeodomain-like 31 84 IPR009057 -
Viun10g01841 184 Gene3D - 34 88 - -
Viun10g01841 184 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 29 134 IPR043363 -
Viun10g01841 184 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 83 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01841 Viun-Chr10 33385248 33386282 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun10g01841 Myb_DNA-binding 3.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01841 - - vum:124847467 223.402