Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01830 ATGGAAGCAGCAGCGGTAGCAACCTCTTCTCTGAAGAAGCTGAAGCGGAAACGCACTGTGGCAAGAAGCGATCCTGAACTCGAGCGTCTGAACTCGCTTCCGTGGAACTCTTCTCTTCCTCAGAACGACGACGATGGCGCTTTCTCCTTGTTCATTGGCACCAACGAACTCGAAGGAGGGTTTCTTTCGCTCGAGGAGATTGATGAGGCGGAGTATGGTTTGGATATTCCTGAACCTGAAGATGGCAAGAGGAAGACGAAGAAGAAAAAATCTATACAGAATGAAGATGTGAAGAAACAGCAGCAAGATGGAGTTGATGGTGCTAGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTGAAGGCTAAAGAGAAGAAAAAGAAGAAGAAGAAGAAGACGAAAAAGAAGGATGCTACGGATGGCCAGAAAGTTGAGCAGCCAGATGCTGATGCTAATGTGGAAGATGGTAACGGTGAAGAGGACAGTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCACCCTCTCCTAATGAAAGCAATTTACAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGACGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTGGCGTTTGGTTTGCCCATTTTGCAACGCATTTTGGAGGAGAGAGAAAAGGATGCAAACATGGTTGAAGAACCTGGAAAGTATTCTCCTAAAGGAGTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCAGTTCAGGTCACGGATCATCTGAAAGCTGTTGCTAAGTATATTAATGTTCGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTTGGAACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAACATCTCCACTGAAGATAATTCTCAAAATGTACAAAAAGGTTGTGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGACAAACACTTGTTTTTTCAGCGACTGTTGCACTGTCTTCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAAGTCAAAAAAAGCAATCATCAACAGATGGATTGAATTCAATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAAAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGCACGTCAATTGCAGCCTTACGTCATATTTCTTCCATATTACGCATTCTTGGAATCAATGTTTGGACTCTTCATGCTCAAATGCAGCAACGAGCACGATTGAAGGCCATTGATCGCTTTCGGGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCCAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGGGCCTCCGCTGAAGGTTGTAGCATTGCTTTAATATCACCAAGAGATACGTCCAAGTTTGCTTCACTGTGCAAATCATTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAAAGACTGTCTCTTGCACGACAAATAGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCGGAGAAAAGCTGGTTTGATCGGAATGCTAGTGCAGTTGAATTAGTTACTGAAAATTATGACAGTGAAGAGGAGCAAGTGAACAAACATAAGCAAATGAAAGCTAGTTCTAGACAATTGAAAAAATTGCAGGAGGAGCTCAATATGCTGATTTCTCGCCCATTACAATCAAAATCATTTTCACATCGGTATTTAGCAGGGTCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAGTTAGCAAGGCAAAAACTAAGTGATCACCAAGGTTCTACTCTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCATGGATGCACTTCAAGCTCTTCGAAGTGCTGGCGAAGAGGTGCGAATGGATATCAAGGATTTTGCCGGAAAACAGAGAAATGTGGAGAATTTAAAAAGGAAGCGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGTAGAAAGCAAAAGAAAAAGCTAAAATACGGGGATGAATAG 2406 0.4239 MEAAAVATSSLKKLKRKRTVARSDPELERLNSLPWNSSLPQNDDDGAFSLFIGTNELEGGFLSLEEIDEAEYGLDIPEPEDGKRKTKKKKSIQNEDVKKQQQDGVDGASSDEVEAELDESVKAKEKKKKKKKKTKKKDATDGQKVEQPDADANVEDGNGEEDSDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKDANMVEEPGKYSPKGVLRALIIAPTRELAVQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTEDNSQNVQKGCVTVSSYQRKKRQTLVFSATVALSSDFRKKLKRGSSQKKQSSTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKSWFDRNASAVELVTENYDSEEEQVNKHKQMKASSRQLKKLQEELNMLISRPLQSKSFSHRYLAGSGVTPLMQEQLQQLARQKLSDHQGSTLGKKGKLVVIGQDCMDALQALRSAGEEVRMDIKDFAGKQRNVENLKRKRKEEKKRLRDQRRKQKKKLKYGDE 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01830 801 MobiDBLite consensus disorder prediction 72 164 - -
Viun10g01830 801 CDD DEADc_DDX24 180 442 - -
Viun10g01830 801 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 336 344 IPR000629 -
Viun10g01830 801 SMART helicmild6 492 573 IPR001650 -
Viun10g01830 801 MobiDBLite consensus disorder prediction 770 801 - -
Viun10g01830 801 Pfam Helicase conserved C-terminal domain 464 572 IPR001650 -
Viun10g01830 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 588 IPR027417 -
Viun10g01830 801 Coils Coil 649 689 - -
Viun10g01830 801 MobiDBLite consensus disorder prediction 30 44 - -
Viun10g01830 801 CDD SF2_C_DEAD 453 582 - -
Viun10g01830 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 169 197 IPR014014 GO:0003724
Viun10g01830 801 Pfam DEAD/DEAH box helicase 193 398 IPR011545 GO:0003676|GO:0005524
Viun10g01830 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 452 613 IPR001650 -
Viun10g01830 801 MobiDBLite consensus disorder prediction 779 793 - -
Viun10g01830 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 415 IPR014001 -
Viun10g01830 801 Gene3D - 449 693 IPR027417 -
Viun10g01830 801 SMART ultradead3 188 417 IPR014001 -
Viun10g01830 801 Coils Coil 110 130 - -
Viun10g01830 801 MobiDBLite consensus disorder prediction 76 102 - -
Viun10g01830 801 PANTHER RNA HELICASE 128 762 - -
Viun10g01830 801 MobiDBLite consensus disorder prediction 14 46 - -
Viun10g01830 801 Gene3D - 119 415 IPR027417 -
Viun10g01830 801 Coils Coil 764 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01830 Viun-Chr10 33256220 33266527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01830 170 613 Eukaryotic Initiation Factors Gene Family AT5G11200 28.205 1.67e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01830 K14805 - gmx:100806018 1327