Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01826 ATGGAAGCAGCAGCGGTAGCAACCTCTTCTCTGAAGAAGCTGAAGCGGAAACGCACTGTGGCAAGAAGCGATCCTGAACTCGAGCGTCTGAACTCGCTTCCGTGGAACTCTTCTCTTCCTCAGAACGACGACGATGGCGCTTTCTCCTTGTTCATTGGCACCAACGAACTCGAAGGAGGGTTTCTTTCGCTCGAGGAGATTGATGAGGCGGAGTATGGTTTGGATATTCCTGAACCTGAAGATGGCAAGAGGAAGACGAAGAAGAAAAAATCTATACAGAATGAAGATGTGAAGAAACAGCAGCAAGATGGAGTTGATGGTGCTAGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTGAAGGCTAAAGAGAAGAAAAAGAAGAAGAAGAAGAAGACGAAAAAGAAGGATGCTACGGATGGCCAGAAAGTTGAGCAGCCAGATGCTGGTTTAGATGCTAATGTGGAAGATGGTAACGGTGAAGAGGACAGTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCACCCTCTCCTAATGAAAGCAATTTACAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGACGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTGGCGTTTGGTTTGCCCATTTTGCAACGCATTTTGGAGGAGAGAGAAAAGGATGCAAACATGGTTGAAGAACCTGGAAAGTATTCTCCTAAAGGAGTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCAGTTCAGGTCACGGATCATCTGAAAGCTGTTGCTAAGTATATTAATGTTCGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTTGGAACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAACATCTCCACTGAAGATAATTCTCAAAATGTACAAAAAGGTTGTGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGACAAACACTTGTTTTTTCAGCGACTGTTGCACTGTCTTCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAAGTCAAAAAAAGCAATCATCAACAGATGGATTGAATTCAATCGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAAAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGCACGTCAATTGCAGCCTTACGTCATATTTCTTCCATATTACGCATTCTTGGAATCAATGTTTGGACTCTTCATGCTCAAATGCAGCAACGAGCACGATTGAAGGCCATTGATCGCTTTCGGGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCCAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGGGCCTCCGCTGAAGGTTGTAGCATTGCTTTAATATCACCAAGAGATACGTCCAAGTTTGCTTCACTGTGCAAATCATTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAAAGACTGTCTCTTGCACGACAAATAGACAAGATAACAAGGAAGGATTCCCAGGTAAAGGCGGAGAAAAGCTGGTTTGATCGGAATGCTAGTGCAGTTGAATTAGTTACTGAAAATTATGACAGTGAAGAGGAGCAAGTGAACAAACATAAGCAAATGAAAGCTAGTTCTAGACAATTGAAAAAATTGCAGGAGGAGCTCAATATGCTGATTTCTCGCCCATTACAATCAAAATCATTTTCACATCGGTATTTAGCAGGGTCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAGTTAGCAAGGCAAAAACTAAGTGATCACCAAGGTTCTACTCTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGCATGGATGCACTTCAAGCTCTTCGAAGTGCTGGCGAAGAGGTGCGAATGGATATCAAGGATTTTGCCGGAAAACAGAGAAATGTGGAGAATTTAAAAAGGAAGCGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGTAGAAAGCAAAAGAAAAAGCTAAAATACGGGGATGAATAG 2412 0.4237 MEAAAVATSSLKKLKRKRTVARSDPELERLNSLPWNSSLPQNDDDGAFSLFIGTNELEGGFLSLEEIDEAEYGLDIPEPEDGKRKTKKKKSIQNEDVKKQQQDGVDGASSDEVEAELDESVKAKEKKKKKKKKTKKKDATDGQKVEQPDAGLDANVEDGNGEEDSDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKDANMVEEPGKYSPKGVLRALIIAPTRELAVQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTEDNSQNVQKGCVTVSSYQRKKRQTLVFSATVALSSDFRKKLKRGSSQKKQSSTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQVKAEKSWFDRNASAVELVTENYDSEEEQVNKHKQMKASSRQLKKLQEELNMLISRPLQSKSFSHRYLAGSGVTPLMQEQLQQLARQKLSDHQGSTLGKKGKLVVIGQDCMDALQALRSAGEEVRMDIKDFAGKQRNVENLKRKRKEEKKRLRDQRRKQKKKLKYGDE 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01826 803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 417 IPR014001 -
Viun10g01826 803 CDD SF2_C_DEAD 455 584 - -
Viun10g01826 803 Gene3D - 118 417 IPR027417 -
Viun10g01826 803 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 338 346 IPR000629 -
Viun10g01826 803 MobiDBLite consensus disorder prediction 1 47 - -
Viun10g01826 803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 454 615 IPR001650 -
Viun10g01826 803 Gene3D - 451 695 IPR027417 -
Viun10g01826 803 MobiDBLite consensus disorder prediction 781 795 - -
Viun10g01826 803 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 171 199 IPR014014 GO:0003724
Viun10g01826 803 PANTHER RNA HELICASE 128 764 - -
Viun10g01826 803 Pfam Helicase conserved C-terminal domain 466 574 IPR001650 -
Viun10g01826 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 590 IPR027417 -
Viun10g01826 803 MobiDBLite consensus disorder prediction 30 44 - -
Viun10g01826 803 Coils Coil 766 797 - -
Viun10g01826 803 MobiDBLite consensus disorder prediction 72 166 - -
Viun10g01826 803 Pfam DEAD/DEAH box helicase 195 400 IPR011545 GO:0003676|GO:0005524
Viun10g01826 803 SMART helicmild6 494 575 IPR001650 -
Viun10g01826 803 CDD DEADc_DDX24 182 444 - -
Viun10g01826 803 MobiDBLite consensus disorder prediction 772 803 - -
Viun10g01826 803 Coils Coil 110 130 - -
Viun10g01826 803 MobiDBLite consensus disorder prediction 76 102 - -
Viun10g01826 803 Coils Coil 651 691 - -
Viun10g01826 803 SMART ultradead3 190 419 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01826 Viun-Chr10 33256220 33268188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01826 172 615 Eukaryotic Initiation Factors Gene Family AT5G11200 28.205 1.75e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01826 K14805 - gmx:100806018 1335.86