Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01825 ATGGCGGAAGAAAATGAAGAAATAAAAACATTTAAGGATTTGGGCTTATCTGAATCACTGGTTGAAGCTTGTGAAAAATTGGGTTGGAAAACTCCACTGAAGATACAGACAGAAGCTATTCCTCTTGCACTAGAAGGTAAAGATGTGATAGGGCTTGCTCAAACTGGGTCTGGGAAGACAGGAGCTTTTGCTCTTCCTATATTGCATGCCCTCTTAGATGCACCTCGTCCAAAAGATTTCTTTGCTTGCGTGCTGTCTCCCACTAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCAGAAATTGGTGTCAAGTGCGCTGTGCTTGTTGGAGGAATTGACATGGTGCAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGGACCCCTGGACGAGTATTGGATCACTTAAAACACACAAAAGGATTTTCTCTTAGTAGATTAAAATACTTGGTCTTAGATGAGGCAGATAGGTTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTACAAATGATTCCTCGAGAGCGTAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGGTCCAGAAGCTCCAGAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCGTCTAAATATTCCACTGTTGATACATTGAAGCAGCAGTATCGATTCTTGCCTGCCAAACACAAGGACTGCTACCTTGTATATATCCTCACTGAAATGGCTGGAAGTACATCAATGATTTTCACTCGTACCTGTGATGCAACTCGACTTCTAGCATTGATCCTTAGGAATCTTGGTTTAAAAGCGATACCTATTAATGGTCATATGAGCCAGCCAAAGAGACTTGGAGCTTTGAACAAGTTCAAATCTGGGGAGTGCAATATTCTCCTTTGTACTGATGTGGCTAGCAGAGGACTGGATATTCCCACTGTAGATATGGTGATTAACTATGATATTCCCACAAATTCCAAAGACTATATACATCGTGTGGGAAGAACTGCTCGAGCAGGACGCTCTGGAGTTGCCATTTCCCTTGTAAATCAGTATGAACTGGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAAAAGCTACCTGAGTTCCCTGCACAAGAAGAGGAAGTTCTCCTTTTGGAAGAACGTGTTAGTGAAGCCAAAAGATTAGCTGCTGCGAAAATGAAGGAGGCTGGAGGGAATAAAAAACGGAGAGGTGGGGAAGATAATGATGGGGAAGATATCGACAAGTACTTGGGTCTCAAGGATGGAAAATCATCCAAGAAGTTTAGAAGAAGATGA 1320 0.4136 MAEENEEIKTFKDLGLSESLVEACEKLGWKTPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLDAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKHTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMIFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGECNILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVLLLEERVSEAKRLAAAKMKEAGGNKKRRGGEDNDGEDIDKYLGLKDGKSSKKFRRR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01825 439 SMART ultradead3 28 228 IPR014001 -
Viun10g01825 439 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Viun10g01825 439 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Viun10g01825 439 MobiDBLite consensus disorder prediction 400 426 - -
Viun10g01825 439 Gene3D - 1 218 IPR027417 -
Viun10g01825 439 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Viun10g01825 439 CDD SF2_C_DEAD 225 354 - -
Viun10g01825 439 Gene3D - 219 391 IPR027417 -
Viun10g01825 439 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Viun10g01825 439 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Viun10g01825 439 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 396 - -
Viun10g01825 439 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Viun10g01825 439 SMART helicmild6 264 345 IPR001650 -
Viun10g01825 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Viun10g01825 439 Pfam Helicase conserved C-terminal domain 240 345 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01825 Viun-Chr10 33236662 33244474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01825 6 377 Eukaryotic Initiation Factors Gene Family AT3G19760 31.649 2.61e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01825 K14777 - gmx:100775796 822.002