Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01821 ATGGCTTACCCTCCTTATCGAAGATCCCACTTGCGCAGCAACACTTACCATGCTCTCGTTCACATCATCTCTCACTTTGCTGAGTACAACTCTTCACATGAAACTCCAACTCAACCCTTCAACATTCCCGATAATGACAGTGGTAGAATGGATGGAATAAACCTAGAAAAGAAGTCCAAGTGCTCTGAAGTTGTTGATTCTGATATTTTGAGTCCTAAGGATGCTAGTAGCCATAAAGATATAGTGGAGGTTCAGGAGATCATTGATGGAGTTGGAGATAAGGATACAGATTTTACTTTCAACAAGATGGTCCTAGATGATATAGAACATATTATGGAGATAGACGACATGTGTACCCAAGTAAATGGTTTTGATAAGGAACATAAGCTAATGAATGAGTTTGAACTGGTTATGAAAGGAACTGAAGATCTTATTTGTGATAGTCATTTAATGCCCACTAACACTAAATTTGATGGGAAACATAATGATGGCCCTGAAGTTGGGTTGATGGATTCTCATGTAGACATGGAGGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGACAATTCATGTAATGTGCCTTCAGCAGATGGTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGAGCCTGTAGATGTAACTAGAAATATGATGTATCCTTCTATGATTATGAACCAAGAAAAGGAAAAAGGTTGTGAGCCTACTTCCTCTGTGGTAAATTCTCTTCAAGATCGCAATGATAGTGGACAAGTGGAGCCTATAACTGGTGGCAAGAAAGGAATTGCATGCAGAGTTGAAGTAGCAACTTCAGAAAAAGCTGTTGAATGTAAGAAGGAAGACAAAATGAAGTTGGTGAATGCCAGTAAAAGGAAAGAGCGTGGTGGAAAGAAAGAGAAAAAGAAGGCATATAGAATGAAGAGAGCAAAAATGAACAGGGAGCTAGGTGTTAAAAGTATGCAGTTGCAGAAGTTTGTACAGAAACCGAAAGTTGTCTCACATTGTCGACATTATATTATGGGGAGGTGCTATGAGGGTGACAAGTGTCAGTTTTCACATGATGTAGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACGAGCTCTCAAAATATCCTTGTAACAATTTTGTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCCCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAACACACCAGTTAGCAATAATCATGGCTCTGGTTCTATGCAGCAAAATCCCTTAACTCATTCTTCTGGAACTCATTCTCGCGTCAATGTTGAACATAAGGTGACAAACACTACACAGAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTAACACCCATCCCTTCTGCACCAAAACAAGGCACAGTAACAACGAAGGAAAGTCCTTTACAAACAGGGACCCACGAAGATCAAAGTGCATTTAACAAAACTCAAAACAAGGTTGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAGGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTCTGGCTCTAAAACTCATATTCGTCCCAATGTGAGTACAGAAAATGGTTTCAATTTGCCTCGGTTACTCAATTTTGGTTTGCCTGAGCAGATAAACAAGGATGTCCACTACAAACCTAGTGACAGGACAAAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAAGAAAAAATCAATCTGTGTCAGAGGGAATAAAATCCAAATTTCCAGATAAAAGCTCAGCTACACCAAGTCCTTTTGTTTCATTCCAGTCTTCTGAGCATCTAAAATCTGATTACCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCGTGAATCTGTGTCAGAGGGAGTAAAATCCAAGTTTCCAGATAAAAGCTCAGCTACACCAAGTCCTTTTGTTTCAGTCCAGTCCTCTGAACACCTAAAATCTGATTATCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATTCCCTTCCGTTGATTCGTCTGCATGA 2238 0.3981 MAYPPYRRSHLRSNTYHALVHIISHFAEYNSSHETPTQPFNIPDNDSGRMDGINLEKKSKCSEVVDSDILSPKDASSHKDIVEVQEIIDGVGDKDTDFTFNKMVLDDIEHIMEIDDMCTQVNGFDKEHKLMNEFELVMKGTEDLICDSHLMPTNTKFDGKHNDGPEVGLMDSHVDMEEGEISGDLGKDDNSCNVPSADGLILPQKQVDDLQEPVDVTRNMMYPSMIMNQEKEKGCEPTSSVVNSLQDRNDSGQVEPITGGKKGIACRVEVATSEKAVECKKEDKMKLVNASKRKERGGKKEKKKAYRMKRAKMNRELGVKSMQLQKFVQKPKVVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGDDCPFDHELSKYPCNNFVSQGFCRRGESCLFSHQVSKEDIPTPSNMRRPVLSTLQSGNANSNTPVSNNHGSGSMQQNPLTHSSGTHSRVNVEHKVTNTTQKQPTPPKGISFINLAKLTPIPSAPKQGTVTTKESPLQTGTHEDQSAFNKTQNKVEIAKKLPSVTPKGVNFLSFGKGSVSGSKTHIRPNVSTENGFNLPRLLNFGLPEQINKDVHYKPSDRTKQSVSLSDIFLNEILRKNQSVSEGIKSKFPDKSSATPSPFVSFQSSEHLKSDYHKHASNSSQKALLSTLAFAAERESVSEGVKSKFPDKSSATPSPFVSVQSSEHLKSDYHKHASNSSQKALLSTLAFAAEHESDIKMKFPSVDSSA 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01821 745 MobiDBLite consensus disorder prediction 497 524 - -
Viun10g01821 745 SUPERFAMILY CCCH zinc finger 389 413 IPR036855 GO:0046872
Viun10g01821 745 ProSiteProfiles Zinc finger C3H1-type profile. 331 358 IPR000571 GO:0046872
Viun10g01821 745 ProSiteProfiles Zinc finger C3H1-type profile. 360 387 IPR000571 GO:0046872
Viun10g01821 745 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 156 692 IPR045124 GO:0003723|GO:0045892
Viun10g01821 745 MobiDBLite consensus disorder prediction 500 524 - -
Viun10g01821 745 SMART c3hfinal6 360 386 IPR000571 GO:0046872
Viun10g01821 745 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Viun10g01821 745 SMART c3hfinal6 388 412 IPR000571 GO:0046872
Viun10g01821 745 Pfam CCCH-type zinc finger 336 356 IPR041367 -
Viun10g01821 745 Pfam RNA-binding, Nab2-type zinc finger 390 410 - -
Viun10g01821 745 Gene3D - 323 388 - -
Viun10g01821 745 ProSiteProfiles Zinc finger C3H1-type profile. 390 413 IPR000571 GO:0046872
Viun10g01821 745 SUPERFAMILY CCCH zinc finger 332 356 IPR036855 GO:0046872
Viun10g01821 745 MobiDBLite consensus disorder prediction 415 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01821 Viun-Chr10 33226827 33231994 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun10g01821 zf-CCCH_4 1.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01821 - - vun:114165961 1466.06