LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g01820	ATGGCTTACCCTCCTTATCGAAGATCCCACTTGCGCAGCAACACTTACCATGCTCTCGTTCACATCATCTCTCACTTTGCTGAGTACAACTCTTCACATGAAACTCCAACTCAACCCTTCAACATTCCCGATAATGACAGTGGTAGAATGGATGGAATAAACCTAGAAAAGAAGTCCAAGTGCTCTGAAGTTGTTGATTCTGATATTTTGAGTCCTAAGGATGCTAGTAGCCATAAAGATATAGTGGAGGTTCAGGAGATCATTGATGGAGTTGGAGATAAGGATACAGATTTTACTTTCAACAAGATGGTCCTAGATGATATAGAACATATTATGGAGATAGACGACATGTGTACCCAAGTAAATGGTTTTGATAAGGAACATAAGCTAATGAATGAGTTTGAACTGGTTATGAAAGGAACTGAAGATCTTATTTGTGATAGTCATTTAATGCCCACTAACACTAAATTTGATGGGAAACATAATGATGGCCCTGAAGTTGGGTTGATGGATTCTCATGTAGACATGGAGGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGACAATTCATGTAATGTGCCTTCAGCAGATGGTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGAGCCTGTAGATGTAACTAGAAATATGATGTATCCTTCTATGATTATGAACCAAGAAAAGGAAAAAGGTTGTGAGCCTACTTCCTCTGTGGTAAATTCTCTTCAAGATCGCAATGATAGTGGACAAGTGGAGCCTATAACTGGTGGCAAGAAAGGAATTGCATGCAGAGTTGAAGTAGCAACTTCAGAAAAAGCTGTTGAATGTAAGAAGGAAGACAAAATGAAGTTGGTGAATGCCAGTAAAAGGAAAGAGCGTGGTGGAAAGAAAGAGAAAAAGAAGAAGGCATATAGAATGAAGAGAGCAAAAATGAACAGGGAGCTAGGTGTTAAAAGTATGCAGTTGCAGAAGTTTGTACAGAAACCGAAAGTTGTCTCACATTGTCGACATTATATTATGGGGAGGTGCTATGAGGGTGACAAGTGTCAGTTTTCACATGATGTAGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACGAGCTCTCAAAATATCCTTGTAACAATTTTGTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCCCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAACACACCAGTTAGCAATAATCATGGCTCTGGTTCTATGCAGCAAAATCCCTTAACTCATTCTTCTGGAACTCATTCTCGCGTCAATGTTGAACATAAGGTGACAAACACTACACAGAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTAACACCCATCCCTTCTGCACCAAAACAAGGCACAGTAACAACGAAGGAAAGTCCTTTACAAACAGGGACCCACGAAGATCAAAGTGCATTTAACAAAACTCAAAACAAGGTTGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAGGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTCTGGCTCTAAAACTCATATTCGTCCCAATGTGAGTACAGAAAATGGTTTCAATTTGCCTCGGTTACTCAATTTTGGTTTGCCTGAGCAGATAAACAAGGATGTCCACTACAAACCTAGTGACAGGACAAAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAAGAAAAAATCAATCTGTGTCAGAGGGAATAAAATCCAAATTTCCAGATAAAAGCTCAGCTACACCAAGTCCTTTTGTTTCATTCCAGTCTTCTGAGCATCTAAAATCTGATTACCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCGTGAATCTGTGTCAGAGGGAGTAAAATCCAAGTTTCCAGATAAAAGCTCAGCTACACCAAGTCCTTTTGTTTCAGTCCAGTCCTCTGAACACCTAAAATCTGATTATCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATTCCCTTCCGTTGATTCGTCTGCATGA	2241	0.398	MAYPPYRRSHLRSNTYHALVHIISHFAEYNSSHETPTQPFNIPDNDSGRMDGINLEKKSKCSEVVDSDILSPKDASSHKDIVEVQEIIDGVGDKDTDFTFNKMVLDDIEHIMEIDDMCTQVNGFDKEHKLMNEFELVMKGTEDLICDSHLMPTNTKFDGKHNDGPEVGLMDSHVDMEEGEISGDLGKDDNSCNVPSADGLILPQKQVDDLQEPVDVTRNMMYPSMIMNQEKEKGCEPTSSVVNSLQDRNDSGQVEPITGGKKGIACRVEVATSEKAVECKKEDKMKLVNASKRKERGGKKEKKKKAYRMKRAKMNRELGVKSMQLQKFVQKPKVVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGDDCPFDHELSKYPCNNFVSQGFCRRGESCLFSHQVSKEDIPTPSNMRRPVLSTLQSGNANSNTPVSNNHGSGSMQQNPLTHSSGTHSRVNVEHKVTNTTQKQPTPPKGISFINLAKLTPIPSAPKQGTVTTKESPLQTGTHEDQSAFNKTQNKVEIAKKLPSVTPKGVNFLSFGKGSVSGSKTHIRPNVSTENGFNLPRLLNFGLPEQINKDVHYKPSDRTKQSVSLSDIFLNEILRKNQSVSEGIKSKFPDKSSATPSPFVSFQSSEHLKSDYHKHASNSSQKALLSTLAFAAERESVSEGVKSKFPDKSSATPSPFVSVQSSEHLKSDYHKHASNSSQKALLSTLAFAAEHESDIKMKFPSVDSSA	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g01820	746	ProSiteProfiles	Zinc finger C3H1-type profile.	391	414	IPR000571	GO:0046872
	Viun10g01820	746	MobiDBLite	consensus disorder prediction	683	703	-	-
	Viun10g01820	746	MobiDBLite	consensus disorder prediction	501	525	-	-
	Viun10g01820	746	MobiDBLite	consensus disorder prediction	416	465	-	-
	Viun10g01820	746	ProSiteProfiles	Zinc finger C3H1-type profile.	361	388	IPR000571	GO:0046872
	Viun10g01820	746	SMART	c3hfinal6	361	387	IPR000571	GO:0046872
	Viun10g01820	746	SMART	c3hfinal6	331	358	IPR000571	GO:0046872
	Viun10g01820	746	SMART	c3hfinal6	389	413	IPR000571	GO:0046872
	Viun10g01820	746	SUPERFAMILY	CCCH zinc finger	390	414	IPR036855	GO:0046872
	Viun10g01820	746	MobiDBLite	consensus disorder prediction	498	525	-	-
	Viun10g01820	746	Gene3D	-	324	389	-	-
	Viun10g01820	746	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	156	693	IPR045124	GO:0003723\|GO:0045892
	Viun10g01820	746	Pfam	RNA-binding, Nab2-type zinc finger	391	411	-	-
	Viun10g01820	746	Pfam	CCCH-type zinc finger	337	357	IPR041367	-
	Viun10g01820	746	SUPERFAMILY	CCCH zinc finger	333	357	IPR036855	GO:0046872
	Viun10g01820	746	MobiDBLite	consensus disorder prediction	681	715	-	-
	Viun10g01820	746	ProSiteProfiles	Zinc finger C3H1-type profile.	332	359	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g01820	Viun-Chr10	33226827	33232216	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Viun10g01820		zf-CCCH_4	1.7e-06	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g01820	-		-	vun:114165961	1470.29