LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g01819	ATGGCTTACCCTCCTTATCGAAGATCCCACTTGCGCAGCAACACTTACCATGCTCTCGTTCACATCATCTCTCACTTTGCTGAGTACAACTCTTCACATGAAACTCCAACTCAACCCTTCAACATTCCCGACATGGAGGAGGGAGAAATTTCTGGAGACTTGGGAAAGGATGACAATTCATGTAATGTGCCTTCAGCAGATGGTTTAATTTTACCGCAGAAGCAGGTAGATGACCTTCAGGAGCCTGTAGATGTAACTAGAAATATGATGTATCCTTCTATGATTATGAACCAAGAAAAGGAAAAAGGTTGTGAGCCTACTTCCTCTGTGGTAAATTCTCTTCAAGATCGCAATGATAGTGGACAAGTGGAGCCTATAACTGGTGGCAAGAAAGGAATTGCATGCAGAGTTGAAGTAGCAACTTCAGAAAAAGCTGTTGAATGTAAGAAGGAAGACAAAATGAAGTTGGTGAATGCCAGTAAAAGGAAAGAGCGTGGTGGAAAGAAAGAGAAAAAGAAGAAGGCATATAGAATGAAGAGAGCAAAAATGAACAGGGAGCTAGGTGTTAAAAGTATGCAGTTGCAGAAGTTTGTACAGAAACCGAAAGTTGTCTCACATTGTCGACATTATATTATGGGGAGGTGCTATGAGGGTGACAAGTGTCAGTTTTCACATGATGTAGTGCCTCGAACAAAATCCAAGCCATGTGGTCACTTTGCTCATAACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACGAGCTCTCAAAATATCCTTGTAACAATTTTGTATCCCAAGGCTTTTGTAGAAGAGGTGAATCTTGCTTGTTTTCACACCAGGTATCCAAAGAAGATATCCCTACCCCTTCAAATATGCGCAGACCAGTGTTGTCTACTCTTCAGTCAGGAAATGCAAATTCCAACACACCAGTTAGCAATAATCATGGCTCTGGTTCTATGCAGCAAAATCCCTTAACTCATTCTTCTGGAACTCATTCTCGCGTCAATGTTGAACATAAGGTGACAAACACTACACAGAAACAGCCTACACCACCTAAAGGAATCAGTTTCATCAATCTTGCAAAATTAACACCCATCCCTTCTGCACCAAAACAAGGCACAGTAACAACGAAGGAAAGTCCTTTACAAACAGGGACCCACGAAGATCAAAGTGCATTTAACAAAACTCAAAACAAGGTTGAGATTGCAAAGAAACTGCCATCTGTGACACCTAAGGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTCTGGCTCTAAAACTCATATTCGTCCCAATGTGAGTACAGAAAATGGTTTCAATTTGCCTCGGTTACTCAATTTTGGTTTGCCTGAGCAGATAAACAAGGATGTCCACTACAAACCTAGTGACAGGACAAAACAAAGTGTATCACTGTCTGACATATTCTTAAATGAGATTTTAAGAAAAAATCAATCTGTGTCAGAGGGAATAAAATCCAAATTTCCAGATAAAAGCTCAGCTACACCAAGTCCTTTTGTTTCATTCCAGTCTTCTGAGCATCTAAAATCTGATTACCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCGTGAATCTGTGTCAGAGGGAGTAAAATCCAAGTTTCCAGATAAAAGCTCAGCTACACCAAGTCCTTTTGTTTCAGTCCAGTCCTCTGAACACCTAAAATCTGATTATCATAAGCATGCATCAAACTCAAGTCAAAAGGCACTCTTGTCAACTTTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATTCCCTTCCGTTGATTCGTCTGCATGA	1848	0.4058	MAYPPYRRSHLRSNTYHALVHIISHFAEYNSSHETPTQPFNIPDMEEGEISGDLGKDDNSCNVPSADGLILPQKQVDDLQEPVDVTRNMMYPSMIMNQEKEKGCEPTSSVVNSLQDRNDSGQVEPITGGKKGIACRVEVATSEKAVECKKEDKMKLVNASKRKERGGKKEKKKKAYRMKRAKMNRELGVKSMQLQKFVQKPKVVSHCRHYIMGRCYEGDKCQFSHDVVPRTKSKPCGHFAHNSCMKGDDCPFDHELSKYPCNNFVSQGFCRRGESCLFSHQVSKEDIPTPSNMRRPVLSTLQSGNANSNTPVSNNHGSGSMQQNPLTHSSGTHSRVNVEHKVTNTTQKQPTPPKGISFINLAKLTPIPSAPKQGTVTTKESPLQTGTHEDQSAFNKTQNKVEIAKKLPSVTPKGVNFLSFGKGSVSGSKTHIRPNVSTENGFNLPRLLNFGLPEQINKDVHYKPSDRTKQSVSLSDIFLNEILRKNQSVSEGIKSKFPDKSSATPSPFVSFQSSEHLKSDYHKHASNSSQKALLSTLAFAAERESVSEGVKSKFPDKSSATPSPFVSVQSSEHLKSDYHKHASNSSQKALLSTLAFAAEHESDIKMKFPSVDSSA	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g01819	615	Gene3D	-	193	258	-	-
	Viun10g01819	615	ProSiteProfiles	Zinc finger C3H1-type profile.	201	228	IPR000571	GO:0046872
	Viun10g01819	615	Pfam	CCCH-type zinc finger	206	226	IPR041367	-
	Viun10g01819	615	SUPERFAMILY	CCCH zinc finger	259	283	IPR036855	GO:0046872
	Viun10g01819	615	SUPERFAMILY	CCCH zinc finger	202	226	IPR036855	GO:0046872
	Viun10g01819	615	ProSiteProfiles	Zinc finger C3H1-type profile.	230	257	IPR000571	GO:0046872
	Viun10g01819	615	MobiDBLite	consensus disorder prediction	552	572	-	-
	Viun10g01819	615	MobiDBLite	consensus disorder prediction	370	394	-	-
	Viun10g01819	615	MobiDBLite	consensus disorder prediction	285	334	-	-
	Viun10g01819	615	Pfam	RNA-binding, Nab2-type zinc finger	260	280	-	-
	Viun10g01819	615	SMART	c3hfinal6	200	227	IPR000571	GO:0046872
	Viun10g01819	615	SMART	c3hfinal6	258	282	IPR000571	GO:0046872
	Viun10g01819	615	SMART	c3hfinal6	230	256	IPR000571	GO:0046872
	Viun10g01819	615	ProSiteProfiles	Zinc finger C3H1-type profile.	260	283	IPR000571	GO:0046872
	Viun10g01819	615	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	28	562	IPR045124	GO:0003723\|GO:0045892
	Viun10g01819	615	MobiDBLite	consensus disorder prediction	367	394	-	-
	Viun10g01819	615	MobiDBLite	consensus disorder prediction	550	584	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g01819	Viun-Chr10	33226827	33232216	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Viun10g01819		zf-CCCH_4	1.3e-06	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g01819	-		-	vun:114165961	1115.52