Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01816 ATGCCTCGCGGAACGCTTGAAGTTATTTTGATCAGCGCCAAAGGCCTCGATGACAATGATTTTCTCTCCAGCATAGATCCTTATGTGATTCTCACATACAGGACACAGGAGCACAAGAGCACTGTGCAAAAAGATGCTGGATCCAAACCTCAATGGAATGAGAGCTTTCTTTTCACTGTTTCTGACAGCACTTCTGAACTAAATCTCAAGATCATGGATAAAGACAACTTTAGTCAGGATGATTTTCTTGGCGAGACAAACATTGATTTGGGTCCACTGTTTGAAGTGGGTAGCCTTCCAGAAACTGTTCACAAGGTTGTGAAGGACGAAGAATATTGCGGAGAGATTAAGGTGGCTCTCACTTTCACTCCTGAGAGAAACGTGGAGCAGGAATACAGTGTAGAGAATGAGAGCTATGGTGGATGGAAAGAATCAAGCGGGGAATTCTAG 450 0.4378 MPRGTLEVILISAKGLDDNDFLSSIDPYVILTYRTQEHKSTVQKDAGSKPQWNESFLFTVSDSTSELNLKIMDKDNFSQDDFLGETNIDLGPLFEVGSLPETVHKVVKDEEYCGEIKVALTFTPERNVEQEYSVENESYGGWKESSGEF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01816 149 Gene3D C2 domain 2 125 IPR035892 -
Viun10g01816 149 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 127 IPR035892 -
Viun10g01816 149 PANTHER C2 DOMAIN-CONTAINING 1 137 - -
Viun10g01816 149 Pfam C2 domain 4 95 IPR000008 -
Viun10g01816 149 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Viun10g01816 149 SMART C2_3c 5 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01816 Viun-Chr10 33215985 33218159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01816 4 144 C2H2 Transcription Factor Family AT4G21160 31.915 1.45e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01816 - - gmx:100500006 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01816 10 33215985 33218159 Viun10g01816 10 33215985 33218159 ECH