Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01790 ATGAGTTTTGGGGGTTTTCTTGACAACAAATCAGGTAGTGGCGCAGCCAGACACGACCTTTCGGATATTCCTTACAACAACGTTACCACCACCAACCATACCAACACCAACGACGACGATAGAATGCCCTTTGGTGCAATCTCTCAGCCCCGCCTGGTGACCACCACCACTCCAACCCTGGCCAAATCCATGTTCAACTCCCCAGGACTATCTCTGGCACTTCAGCAAACCAATATAGATGGACAAGAAGATGTGAATAGAATGGTCGAAAATAGCTTCGAACCAAACGGTTTGCGAAGAAGCAGAGAGGAAGAGCATGAAAGCAGATCTGGCAGCGACAACATCGACGGCGCTTCCGGCGATGAACAAGACGCCGCCGACAAGCCTCCGAGGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTTGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAGAAGCAAAGACTCGAACTCAGCAAGAGGCTGAGCTTGGAGACTCGACAGGTGAAGTTTTGGTTCCAAAACCGGAGAACCCAAATGAAGACCCAGTTGGAGCGGCACGAGAACACGTTGCTGAGACAAGAGAACGACAAGCTGAGAGCGGAGAACATGTCTATCAGGGACGCAATGAGGAACCCCATGTGCTCCAATTGCGGTGGCCCTGCCATCATCGGCGAGATTTCGCTGGAGGAGCAGCACCTTCGGATTGAGAACGCGCGGTTGAAGGACGAGCTCGATCGCGTGTGTGCACTCACGGGCAAGTTTCTGGGTCGCCCCGTTTCTTCGTTACCGAATTCAAGTTTGGAGCTTGGCGTTGGGGGGAACGGGTTCGGTGGAATCAGCATTGGCACCACATTGCCTTTAGGACAAGATTTTGGAATGGGAATGTCGATGTCTGTGTCTAACAACCCTTTGGCTATGGTGTCTCCCTCGAGTACCAGACCAACTTCTGTTGTGGGTGGGTTTGATAGGTCCATGGAGAGGTCCATGTTTCTCGAGCTTGCTTTGGCCGCCATGGATGAGTTGGTGAAGATGGCTCAAACTGGGGAGCCTCTTTGGGTGAGGAATGTTGAAGGTGGGAGGGAAATCATGAACCATGAGGAGTACGTGAGAACCTTCACTCCTTGTATTGGTTTGAGACCCAATGGGTTTGTGTCTGAAGCATCTAGGGAAAATGGAATGGTCATTATTAACAGTTTGGCACTTGTTGAGACTCTCATGGACGCGAATCGATGGGCAGAGATGTTTCCTTGTATCATTGCAAGAACCTCCACTACTGAAGTGATATCTAACGGGATAAATGGAACAAGAAATGGAGCACTTCAATTAATGCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTTCCTGTTCGTGAGGTCAATTTCTTAAGGTTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCAGTGGTGGATGTGTCCATAGATAGCATCAGAGAAAGTTCAGGAGCAGCATCAACTTTTGTCAACTGTAGGAGGCTTCCTTCTGGTTGTGTTGTGCAAGACATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGATGAGAGCCAAATTCATCAGGTTTATAGACCACTGTTGAACTCAGGCATGGGGTTCGGTGCTCAGCGTTGGGTGGCTACCCTTCAACGCCAATGCGAGTGTCTTGCTATCTTAATGTCCTCAGCAACACCCTCTCGAGATCATTCAGCAATAACGGCGGGGGGAAGGCGGAGCATGGTGAAGCTGGCGCAGCGAATGACCAACAACTTCTGCGCCGGCGTGTGTGCCTCCACGGTGCACAAGTGGAACAAACTCAATCCCGGGAACGTGGATGAGGACGTGAGGGTGATGACGCGGAAGAGCGTGGATGATCCCGGCGAGCCGCCGGGGATTGTGCTGAGCGCCGCCACCTCCGTTTGGCTCCCCGTGTCGCCGCAGAGGCTCTTCGACTTCCTCCGGGACGAGCGCCTCCGGAGCGAGTGGGACATACTCTCCAACGGCGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACTGCGTCTCTCTCCTGCGAGCCAGTGCCATAAACTCCAGCCAGAGCAGCATGCTGATACTACAGGAGACATGCATAGACGAGGCGGGATCACTTGTGGTGTACGCGCCGGTGGATATCCCAGCCATGCACGTGGTTATGAACGGTGGTGATTCGGCTTACGTGGCATTGCTGCCATCGGGATTTGCTATTGTTCCAGATGGGCCAGGATCTCGTGGGTCACAGAACGGGCCTACTGCCGTAAGTAACGGTGGTGATAATGGTGGGACGCGTGTGAGTGGGTCCCTGTTAACGGTGGCGTTTCAGATACTTGTGAATAGTCTTCCTACAGCGAAGCTCACAGTGGAGTCCGTGGAAACTGTGAACAACCTCATATCATGCACCGTTCAAAAAATCAAAGCTGCCCTGCACTGTGAAAGTTAA 2502 0.5236 MSFGGFLDNKSGSGAARHDLSDIPYNNVTTTNHTNTNDDDRMPFGAISQPRLVTTTTPTLAKSMFNSPGLSLALQQTNIDGQEDVNRMVENSFEPNGLRRSREEEHESRSGSDNIDGASGDEQDAADKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALTGKFLGRPVSSLPNSSLELGVGGNGFGGISIGTTLPLGQDFGMGMSMSVSNNPLAMVSPSSTRPTSVVGGFDRSMERSMFLELALAAMDELVKMAQTGEPLWVRNVEGGREIMNHEEYVRTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAASTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQIHQVYRPLLNSGMGFGAQRWVATLQRQCECLAILMSSATPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSSQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSQNGPTAVSNGGDNGGTRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01790 833 SMART HOX_1 130 193 IPR001356 GO:0003677
Viun10g01790 833 FunFam Homeobox-leucine zipper protein HDG1 119 205 - -
Viun10g01790 833 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Viun10g01790 833 MobiDBLite consensus disorder prediction 761 780 - -
Viun10g01790 833 SUPERFAMILY Homeodomain-like 118 189 IPR009057 -
Viun10g01790 833 SUPERFAMILY Bet v1-like 331 564 - -
Viun10g01790 833 ProSiteProfiles START domain profile. 330 567 IPR002913 GO:0008289
Viun10g01790 833 CDD homeodomain 131 189 IPR001356 GO:0003677
Viun10g01790 833 MobiDBLite consensus disorder prediction 92 139 - -
Viun10g01790 833 SUPERFAMILY Bet v1-like 591 826 - -
Viun10g01790 833 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Viun10g01790 833 MobiDBLite consensus disorder prediction 765 780 - -
Viun10g01790 833 FunFam Homeobox-leucine zipper protein GLABRA 2 339 563 - -
Viun10g01790 833 Coils Coil 183 215 - -
Viun10g01790 833 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 128 830 IPR042160 -
Viun10g01790 833 MobiDBLite consensus disorder prediction 23 42 - -
Viun10g01790 833 CDD START_ArGLABRA2_like 334 563 - -
Viun10g01790 833 Gene3D - 118 205 - -
Viun10g01790 833 MobiDBLite consensus disorder prediction 1 45 - -
Viun10g01790 833 MobiDBLite consensus disorder prediction 96 112 - -
Viun10g01790 833 Pfam Homeodomain 132 187 IPR001356 GO:0003677
Viun10g01790 833 SMART START_1 339 564 IPR002913 GO:0008289
Viun10g01790 833 Pfam START domain 339 564 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01790 Viun-Chr10 32941026 32946677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01790 1 833 Homeobox Transcription Factor Family AT3G61150 65.796 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun10g01790 START 1.6e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01790 K09338 - gmx:100811873 1487.63