Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01762 ATGATTACTTGCTCTAAAGTAAGGGAAAGAAAGCCTCGTGGGGCATCTTTAGCTTTGTTGACATCAATTCAATTTTACTTCACCACCACTCTGTCCAAATTTGAAATCATGGTGGAAGCTAGTAAAGCTGCAGTAGCAGTTGATGATGCTTGTTCAAGAGAGAACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCTAATGCAAAAGAGGTTAAAGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTAGAGCAGATTCCGTCTTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAACGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTAAAGAAGCCACTGAATTGGCAGAGTTGTGTGTGAAGGAGAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACAGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTAGGTGAAGCTACTCTGCCATTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAGCATAAGAGAACTTCTAGCACGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCTTTGGACAGACTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAACATTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGAAGACAGTTACTGTTATATGCTCTCTGGTGGAATCTGGGAGCTGTGAACAATGGTTAGTTTCTGAAGGAGTTCTTCCACCTCTTATTAGACTTGTTGAATCTGGTAATGCTGTAAGTAAAGAAAAGGCTATAGTGTCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACACGTGCAATTGTTGGACATGGTGGTGTTCGGCCATTGATTGAGCTTTGTCAGAGTGGAGATTCAGTGTCACAGGCTGCAGTTGCATGTACTTTGACAAATGTATCAGCTGTTCCTGAGGTGAGACAGGTTTTGGCTGAAGAAGGGATTGTAAGTGTTATGATCAATCTTCTTAGCTGTGGAATTTTGTTAGGTTCCAAAGAGTATGCAGCAGAGTGCTTGCAGAATCTCACTTCAAGCAATGAGCATTTGAGAAAGTGTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACATATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGGGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTGTCTCTGGGTTTGCTTCCCCGTTTGGTTCATGTTCTGAAGTGTGGATCTTTGGGTGCTCAACATGCTGCAGCTTCTGTCATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAACAAATGCTGCTAGAGAGGTTGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCTCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTGCCAAATCTTGTGCAGTTGCTTGATCCAAGCCCTCAGAACACTGCCAAAAAGTATGCAGTTTCGTGCCTTGGATCACTTTCTCCATGTAAGAAGTGTAAGAAACTGATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACGGAGATGGAGATTCCAGGAGCTAAAAAGCTTCTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1794 0.4314 MITCSKVRERKPRGASLALLTSIQFYFTTTLSKFEIMVEASKAAVAVDDACSRENWLLHAQELVPVALANAKEVKVFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNSIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNIAALVQLLTATSPRIREKTVTVICSLVESGSCEQWLVSEGVLPPLIRLVESGNAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAVACTLTNVSAVPEVRQVLAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPRLVHVLKCGSLGAQHAAASVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNAAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMEIPGAKKLLERLERGKLRSLFSRK 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01762 597 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 48 595 - -
Viun10g01762 597 Gene3D - 184 371 IPR011989 -
Viun10g01762 597 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 316 IPR000225 GO:0005515
Viun10g01762 597 Gene3D - 372 585 IPR011989 -
Viun10g01762 597 Pfam Armadillo/beta-catenin-like repeat 306 344 IPR000225 GO:0005515
Viun10g01762 597 SMART arm_5 467 507 IPR000225 GO:0005515
Viun10g01762 597 SMART arm_5 388 426 IPR000225 GO:0005515
Viun10g01762 597 SMART arm_5 427 466 IPR000225 GO:0005515
Viun10g01762 597 SMART arm_5 345 386 IPR000225 GO:0005515
Viun10g01762 597 SMART arm_5 304 344 IPR000225 GO:0005515
Viun10g01762 597 SMART arm_5 508 550 IPR000225 GO:0005515
Viun10g01762 597 SMART arm_5 222 262 IPR000225 GO:0005515
Viun10g01762 597 SUPERFAMILY ARM repeat 192 576 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01762 Viun-Chr10 32644369 32647055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01762 443 580 U-box Gene Family AT3G54790 27.152 6.81e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01762 - - var:108346326 1095.88