Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01761 ATGGTGGAAGCTAGTAAAGCTGCAGTAGCAGTTGATGATGCTTGTTCAAGAGAGAACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTGGCTCTTGCTAATGCAAAAGAGGTTAAAGTGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTAGAGCAGATTCCGTCTTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAACGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTAAAGAAGCCACTGAATTGGCAGAGTTGTGTGTGAAGGAGAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACAGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTAGGTGAAGCTACTCTGCCATTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAGCATAAGAGAACTTCTAGCACGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCTTTGGACAGACTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGGAACATTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGAAGACAGTTACTGTTATATGCTCTCTGGTGGAATCTGGGAGCTGTGAACAATGGTTAGTTTCTGAAGGAGTTCTTCCACCTCTTATTAGACTTGTTGAATCTGGTAATGCTGTAAGTAAAGAAAAGGCTATAGTGTCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACACGTGCAATTGTTGGACATGGTGGTGTTCGGCCATTGATTGAGCTTTGTCAGAGTGGAGATTCAGTGTCACAGGCTGCAGTTGCATGTACTTTGACAAATGTATCAGCTGTTCCTGAGGTGAGACAGGTTTTGGCTGAAGAAGGGATTGTAAGTGTTATGATCAATCTTCTTAGCTGTGGAATTTTGTTAGGTTCCAAAGAGTATGCAGCAGAGTGCTTGCAGAATCTCACTTCAAGCAATGAGCATTTGAGAAAGTGTGTTATATCAGAAGGTGGTGTTAGAAGTCTTCTGACATATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGGGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTGTCTCTGGGTTTGCTTCCCCGTTTGGTTCATGTTCTGAAGTGTGGATCTTTGGGTGCTCAACATGCTGCAGCTTCTGTCATTTGCCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTGGGTGAAGCTGGGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAACAAATGCTGCTAGAGAGGTTGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCTCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTGCCAAATCTTGTGCAGTTGCTTGATCCAAGCCCTCAGAACACTGCCAAAAAGTATGCAGTTTCGTGCCTTGGATCACTTTCTCCATGTAAGAAGTGTAAGAAACTGATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACGGAGATGGAGATTCCAGGAGCTAAAAAGCTTCTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1686 0.4348 MVEASKAAVAVDDACSRENWLLHAQELVPVALANAKEVKVFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNSIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRRNIAALVQLLTATSPRIREKTVTVICSLVESGSCEQWLVSEGVLPPLIRLVESGNAVSKEKAIVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAVACTLTNVSAVPEVRQVLAEEGIVSVMINLLSCGILLGSKEYAAECLQNLTSSNEHLRKCVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPRLVHVLKCGSLGAQHAAASVICRVCSSMEMKKMVGEAGCIPLLIKMLEAKTNAAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMEIPGAKKLLERLERGKLRSLFSRK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01761 561 Gene3D - 337 549 IPR011989 -
Viun10g01761 561 Gene3D - 149 336 IPR011989 -
Viun10g01761 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 559 - -
Viun10g01761 561 Pfam Armadillo/beta-catenin-like repeat 270 308 IPR000225 GO:0005515
Viun10g01761 561 SMART arm_5 391 430 IPR000225 GO:0005515
Viun10g01761 561 SMART arm_5 352 390 IPR000225 GO:0005515
Viun10g01761 561 SMART arm_5 309 350 IPR000225 GO:0005515
Viun10g01761 561 SMART arm_5 431 471 IPR000225 GO:0005515
Viun10g01761 561 SMART arm_5 186 226 IPR000225 GO:0005515
Viun10g01761 561 SMART arm_5 472 514 IPR000225 GO:0005515
Viun10g01761 561 SMART arm_5 268 308 IPR000225 GO:0005515
Viun10g01761 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Viun10g01761 561 SUPERFAMILY ARM repeat 156 540 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01761 Viun-Chr10 32643602 32647055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01761 407 544 U-box Gene Family AT3G54790 27.152 6.96e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01761 - - var:108346326 1027.31