Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01760 ATGACTTTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGGTTTGCTTTCATTTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGCACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGGTGATTCCAGAAAACCTTCATCTAATTCAAGGCCATCCAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCCAGGCCAAAGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATATTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAAGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACAGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGGTCATGATTCGCCTGATGGGAGGTATGGTCGTGGTAGATCGCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCCGACCAGAAACAAAAGGAAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGAAAGATCACGTTCTTGA 729 0.4348 MTFAQCSISNMFQHRNHDDFATVAGFAFIYMEDERDAEYAIRRLDRTEFGRKARRIRVEWTKQERDSRRSGGGDSRKPSSNSRPSKTLFVINFDPVHARPKDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPETKGSPKYERAESPINGRYDSRSPPPRERSRS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01760 242 FunFam serine/arginine-rich splicing factor RS41 isoform X2 78 209 - -
Viun10g01760 242 Gene3D - 81 168 IPR012677 -
Viun10g01760 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 157 IPR000504 GO:0003723
Viun10g01760 242 SMART rrm1_1 87 153 IPR000504 GO:0003723
Viun10g01760 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 150 IPR000504 GO:0003723
Viun10g01760 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Viun10g01760 242 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 99 - -
Viun10g01760 242 MobiDBLite consensus disorder prediction 160 242 - -
Viun10g01760 242 SUPERFAMILY RNA-binding domain, RBD 24 161 IPR035979 GO:0003676
Viun10g01760 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Viun10g01760 242 MobiDBLite consensus disorder prediction 213 242 - -
Viun10g01760 242 MobiDBLite consensus disorder prediction 61 86 - -
Viun10g01760 242 MobiDBLite consensus disorder prediction 160 182 - -
Viun10g01760 242 Gene3D - 8 80 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01760 Viun-Chr10 32635905 32638788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01760 25 178 Eukaryotic Initiation Factors Gene Family AT1G49760 25.309 9.12e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01760 K12893 - gmx:100797778 347.821