Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01759 ATGAGGCCTGTTTTCTGTGGGAACCTGGATTTCGACGCGCGTCAATCTGATGTGGAGAGGCTCTTCAGAAGATACGGGAAAGTCGATAGAGTCGACATGAAATCTGGGTTTGCTTTCATTTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGCACGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGGTGATTCCAGAAAACCTTCATCTAATTCAAGGCCATCCAAAACTTTGTTTGTTATTAATTTTGATCCAGTTCACGCCAGGCCAAAGGATCTGGAGAGACATTTTGACCCTTATGGGAAAATATTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCACAAGAGGATGCTACTAGAGCTTTGGAGGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACAGTGGAGTATGCCATAAGAGATGATGATGACAGAGATAGAAGGAACGGATACAGTCCTGAAAGAAGAGGTCATGATTCGCCTGATGGGAGGTATGGTCGTGGTAGATCGCCCAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCATCTTCCCGACCAGAAACAAAAGGAAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGAAAGATCACGTTCTTGA 762 0.4475 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFIYMEDERDAEYAIRRLDRTEFGRKARRIRVEWTKQERDSRRSGGGDSRKPSSNSRPSKTLFVINFDPVHARPKDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPETKGSPKYERAESPINGRYDSRSPPPRERSRS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01759 253 MobiDBLite consensus disorder prediction 171 193 - -
Viun10g01759 253 FunFam serine/arginine-rich splicing factor RS41 isoform X2 89 220 - -
Viun10g01759 253 MobiDBLite consensus disorder prediction 72 97 - -
Viun10g01759 253 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Viun10g01759 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 168 IPR000504 GO:0003723
Viun10g01759 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Viun10g01759 253 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 108 234 - -
Viun10g01759 253 Gene3D - 1 85 IPR012677 -
Viun10g01759 253 MobiDBLite consensus disorder prediction 171 253 - -
Viun10g01759 253 Gene3D - 86 220 IPR012677 -
Viun10g01759 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Viun10g01759 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 161 IPR000504 GO:0003723
Viun10g01759 253 MobiDBLite consensus disorder prediction 224 253 - -
Viun10g01759 253 SMART rrm1_1 3 70 IPR000504 GO:0003723
Viun10g01759 253 SMART rrm1_1 98 164 IPR000504 GO:0003723
Viun10g01759 253 SUPERFAMILY RNA-binding domain, RBD 2 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01759 Viun-Chr10 32635611 32638788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01759 4 163 Eukaryotic Initiation Factors Gene Family AT4G34110 24.000 4.31e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01759 K12893 - gmx:100797778 417.157