Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01758 ATGGCTGGAGCTGAAGCTACAAAACATGATTCTACTACAAGTCCTACAACCACTGCTACCACCAACATGGCCACCAGATCGAGCAAGCCAGCGACCATGATCAGAAGATTCATTGGGGTGAGGCAAAGGCCCTCGGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCACGTGAGGTTGTGGCTTGGAACCTATGACACCCCAGAAGAGGCTGCAAGGGCTTATGATGAAGCTGCAAGAGCCCTGAGAGGTGAAAATGCAAGAACCAACTTTGCTCCAATGAACCAAGCCACAGGGCAATCAGGGTCCACCCTTTTAACCGGTGATGGAAAGCATGGTCTGAGCTTTGCTTCCTTGAAAGCCAAGTTGAGCAAGAATCTTCAGAACATCATGGCTAGGGCAAGTGACCACAACAAGTCCTCCAAGAGTAGGGTGAGTGACCACTTCACCTTTGCCAGCATCTTCCACCGCAGGAGCTACCAAATCCCTGAAGGGGACATGAGGAACATTGAGAAAGTGGTGCAGCCTAGCATTATTGTCCCACCTGTGGAAGGTGCTGTTGATTATGCTTCTGCTGCTAACTGGGAAAGTGCTTCCAGTGTCTCTGATTGCAGCTCTGAGTGGGTCGGGTTCGGCAAACTCGGGTTGGATCAGTCAGACGGGTCGGATATTGGAGAGTTCAGTGTTGGTGATCAAGGGTTCTTGGAGCAGTTGATGGGGTGGGTTGAAAGCCCTGATGTTAGTGATCAAAGTGAGTGTTCAAGGAGTAAGAGGTTCAAGGTATCTTCTTCTGTGCTTGTACCTCCAACTTTCACTGCTTCTCCTTATGACTGTGGATCCCCTTATAGCGGTTATGCCTCCCCTTATAACGGTTATGCATCCCCTTATAACGGTTATGCTTCTCCCTATTGTGCCTCTCCTAGTAATGGTTGTGCTTCTCCATATTACAATAAGAAGTGA 963 0.4922 MAGAEATKHDSTTSPTTTATTNMATRSSKPATMIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPMNQATGQSGSTLLTGDGKHGLSFASLKAKLSKNLQNIMARASDHNKSSKSRVSDHFTFASIFHRRSYQIPEGDMRNIEKVVQPSIIVPPVEGAVDYASAANWESASSVSDCSSEWVGFGKLGLDQSDGSDIGEFSVGDQGFLEQLMGWVESPDVSDQSECSRSKRFKVSSSVLVPPTFTASPYDCGSPYSGYASPYNGYASPYNGYASPYCASPSNGCASPYYNKK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01758 320 SUPERFAMILY DNA-binding domain 37 93 IPR016177 GO:0003677
Viun10g01758 320 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Viun10g01758 320 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Viun10g01758 320 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Viun10g01758 320 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Viun10g01758 320 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Viun10g01758 320 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Viun10g01758 320 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 188 - -
Viun10g01758 320 MobiDBLite consensus disorder prediction 7 29 - -
Viun10g01758 320 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Viun10g01758 320 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Viun10g01758 320 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01758 Viun-Chr10 32621307 32622269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01758 36 93 AP2-EREBP Transcription Factor Family AT5G19790 74.138 1.02e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g01758 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01758 K09286 - gmx:100799444 459.529