Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01756 ATGGGTTTTGATACCAATTTGGTGACTACTATCATTGGGTTTGGGTTGAGTGCAACTTTCATTGTCTTCGTTTGCACAAAAATAATTTGTGGAAGACTACACGAGCGTGTTGGAATACGAACAGTATATGAAATTGAACCAAGAACAGACATAGAACGGTCAGAGTTTCATGGTAATGAACCTGAACCTGCTTTTGTTGCTGCAATCCCCACTTTGAGTTTCAACCATGAAGCCTTCGTTTCAACGGGAAGCACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAAAGAAGTGTTGCGCATCATACCAAAATGTGGCCACACTTTTCACCTGTCTTGCATTGATATGTGGCTGAGAAAACAATCCACTTGTCCAGTGTGTCGTTTGTCACTGCAAAATGCTTCTGAATCAAAACATGTGAGACATGTAACATTTACCATAAGACATTCTCTGGATGAGTCCAATAATACTTCAGAAAGGAACATAGACAGTGAGAGACAAGTTGAACCTAATTCTAGGATATCTCTACAATCAACTTTGGGAGAGATAGGATGTTAG 561 0.3975 MGFDTNLVTTIIGFGLSATFIVFVCTKIICGRLHERVGIRTVYEIEPRTDIERSEFHGNEPEPAFVAAIPTLSFNHEAFVSTGSTQCVICLAEYKEKEVLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNASESKHVRHVTFTIRHSLDESNNTSERNIDSERQVEPNSRISLQSTLGEIGC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01756 186 Pfam Ring finger domain 86 129 IPR001841 -
Viun10g01756 186 SUPERFAMILY RING/U-box 86 135 - -
Viun10g01756 186 SMART ring_2 87 128 IPR001841 -
Viun10g01756 186 CDD RING-H2_EL5-like 86 129 - -
Viun10g01756 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Viun10g01756 186 PANTHER OS11G0150450 PROTEIN 3 162 - -
Viun10g01756 186 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01756 Viun-Chr10 32603990 32605804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01756 77 181 C3H Transcription Factor Family AT4G10160 36.190 2.51e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01756 - - gmx:100800505 291.197