Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01729 ATGGCTGATCAATCTTCTGGAGACGTTGATCTAAGGTTGGGAGAACCCAAGGGGCCGAAAGTGGAGCCCGAGACGGAGGAGGGCTCCGCGATACGTGTCATGCCGGTGGCTGTGCACGTGCCGTCAGGGATGTCCATGTCTGTGTCCAAGGCCCTGGCCCAAGCCCAGGCCCAACCGCAGAAGCGGGCCTCCACCAAGGACCGCCACACCAAAGTCGAGGGCCGAGGCAGGAGGATCCGAATGCCCGCCACGTGTGCGGCGCGGATCTTCCAGCTCACCCGAGAACTAGGCCACAAGTCAGACGGCGAAACCATCCGCTGGCTCCTCGAACACGCCGAGCCAGCCATCATCGCCGCTACCGGCACCGGCACCGTCCCCGCCATCGCCATGTCCGTCAACGGCACGCTCAAGATTCCGACCACCTCCCCCTCCGACCCGGAACTCGGAGACCCGCCCGAGAAAAAAAAGCGCAAGCGACCCGCCAACAGCGCCTACGTGGACGTAAACGACGGCGCCGTTTCGGTCCCCGCCGGCCTCGCGAGCTCCAACAAGCAAAGCGCGAGGACGATCACGACGACCGCCTCAACGACGCCCGCAATTCCGCAGCACACCGCGATTCCGCTCCCGCAGGGCGTGGTCCCTGTGTGGGCCGTGCCTTCAAACGCTGTCGTTCCGGCTGCAGGCGCGTTCTTCGTCGTCCCCCAAGCCGCGTCTTTTCAGCACCATCCGCAGTTTTTCACCATAGCACGACCTATCTCCGCGTTTGTCTCCTCCATGGTCACCCCTGTTCAACTCCAACCAACCTCCACATCCTCTTCTTCAAACGCTAACTCTTCCTCCACCGCGCCGTCGTCGAAGTCCCCGGCCAGAGCCACCGTCATGGCTCCAACCACCACCACCACAACTCACATGCTGAGAGATTTCTCGTTGGAGATTTACGACAAACAAGAGCTGCAGTTCATGTCGCGCGCGTCTTCCAAGCATTGA 987 0.6221 MADQSSGDVDLRLGEPKGPKVEPETEEGSAIRVMPVAVHVPSGMSMSVSKALAQAQAQPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSDPELGDPPEKKKRKRPANSAYVDVNDGAVSVPAGLASSNKQSARTITTTASTTPAIPQHTAIPLPQGVVPVWAVPSNAVVPAAGAFFVVPQAASFQHHPQFFTIARPISAFVSSMVTPVQLQPTSTSSSSNANSSSTAPSSKSPARATVMAPTTTTTTHMLRDFSLEIYDKQELQFMSRASSKH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01729 328 Pfam TCP family transcription factor 64 157 IPR017887 -
Viun10g01729 328 MobiDBLite consensus disorder prediction 13 27 - -
Viun10g01729 328 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
Viun10g01729 328 MobiDBLite consensus disorder prediction 148 163 - -
Viun10g01729 328 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 313 IPR005333 GO:0003700
Viun10g01729 328 MobiDBLite consensus disorder prediction 136 163 - -
Viun10g01729 328 MobiDBLite consensus disorder prediction 266 300 - -
Viun10g01729 328 MobiDBLite consensus disorder prediction 1 30 - -
Viun10g01729 328 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01729 Viun-Chr10 32474736 32476136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01729 45 327 TCP Transcription Factor Family AT2G45680 54.088 7.12e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun10g01729 TCP 9.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01729 - - pvu:PHAVU_010G089100g 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01729 10 32474736 32476136 Viun10g01729 10 32474736 32476136 ECH