Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01728 ATGGACAATTATGGGTCTTCACAACCTCCATATGGGTATCCAAGCCCTTATTTCTACCCTGGCAACACCCCTCAATACCCTCCTCCTGATCCATATGCACGACCACCGTATCCATATCCACCAAATGCTCCAGATACCTTCAACTACTCATACCCCCCACCTTCTCCACCACCCTCAGCACCTTATTCTAGCCACACACGCCATTTCACATACCCTTCTCCTTCTCATCCTCCACCATCACCACCATCTCATGATTCCTATGACATTTCTATGCCTCAATCAACCGATACTTATCCTTACCCTGACCACGATCCTCCAAGTAGTGATAGTTATAAGCCTCCTGTGGTTTCTATTCACCCTCCTTTGGATGATCACATGAGCATTGTCAGGCTGTCTGAGACCACAAGTACACTTGCATTGTTGACACAATCCCCTTCAATTTCAAATTACTATAGAGATGAGTTTTTTGGATTCTCTATCTACTCCCCCTCAGATTTGGATAAAGAGGACCCTACTAGACCTTCTGCTCAATCTGATGACTCAATGAGTAATCAGAGCTTGCAGATTGTCCCAGTTCAGAACAAAGCGTCTCTGCCAGTTCTGCTCCTGCATGGGAATTTGGATATTTGGGTTCATCGAGCCAAACACCTTCCAAACATGGACATGTTCCACAAGACTTTGGGAGATGTGTTTGGGAAGTTGCCTGTAAATGTCAACAAGGTGGATGGAACGGTGAGCCGGAAGATTACCAGTGATCCTTATGTAACAATTTCTGTGTCAAATGCTGTAATTGGGAGGACTTCTGTGATTAGCAATAGTGAAAATCCTGTGTGGGAGCAACATTTCTATGCTCCTGTTGCACATCATGTGGCTGAAGTTCATTTTGTTGTGAAGGACAGTGATGTGGTGGGTTCGCAGCTCATTGGTGTTGTGGCAGTTCCAGCTGAACAAATATACTCAGGGGAAAAGATAAATGGGAACTACCCTATTCTGAATAGCAGTGGGAAGCCTTGTAAGCCAGGTGCTGTCTTGAGATTATCCATTCAGTACATTCCAATTGAGAAACTCATCACATATGATCAAGGAGTTGGAGCTGGTCCTGAATATCATGGGGTTCCTGGCACGTATTTTCCATTGAGGAAAGGGGGAACTGTAACTCTTTATCAAGATGCTCATGTCCCAAGTGGTTCTCTACCTAATGTTATGCTTAACCATGGCTTGCATTATAATCATGGAAAGTGTTGGAATGACATCTTTGAAGCCATACGTGCAGCTCAGAGATTGGTTTACATTACGGGGTGGTCTGTGTGGCACAAAGTTAGGTTGTTAAGGGATACTGACAATGCAACAGATTCCACCCTGGGTGAACTTCTTAGGACTAAGTCATCGGAGGGAGTAAGAGTGCTTCTACTTGTATGGGATGACCCTACATCAAGAAGCATTCTTGGTTACAAAATGGATGGTGTAATGGCAACTCATGATGAGGAAACTAGACGATTTTTCAAGCACTCTTCTGTGCAAGTGCTGCTTTGTCCCCGCATTGCTGGAAAACGACACAGCTGGGCCAAACAAAAGGAAGTTGAAACAATATATACACATCATCAAAAAACTGTAATTGTGGATGCTGATGCTGGAAATGGCAAAAGAAAAATTGTGGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATAATCCTCACCATCCTATCTTTAGGACACTGGAGACACTGCATAAGGATGACTATCACAACCCTACTTTCACGGGTAATACTGGTGGTTGTCCACGGGAGCCATGGCATGACTTACATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCGAAACCTAAAGGGTTAAAAAAGTTTACAAGTTCATATGATGATGCATTACTTAAGCTAGACAGAATAAAAGATGTTATCAGTTCATCTGATGATCTTGATCTTGATGAGGATAACAATCCTGCATCATGGCATGTTCAGATATTCCGTTCAATTGATTCAAATTCTGTCAAGGGATTTCCGAAGGTTTCAAGAAATGCATCAAGCGCAAATCTGGTATGTGGGAAGAATGTACTGATTGACATGAGTATACATACAGCATATATAAAGGCTATTCGCGCTGCACAACATTACATTTATATTGAGAATCAATATTTCATTGGGTCTTCATATAATTGGAGTCAATATAGAGACCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCACTGAAGATTGCTGCAAAGATAAGAGCAAATGAGAGATTTGCAGTGTACATTGTTATTCCAATGTGGCCGGAGGGTGTTCCAACAGGTGCTGCCACTCAAAGGATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTATGAAACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGTCTTGGCAATAGGGAGGCAGTAGATGTGTATGAGAATGTTACTGTGTCTGGAAATCCTCCACCAGCGAATAGTCCACAAGCAATTAGTAGAAACAATCGACGATTCATGATTTATGTTCATTCAAAAGGTATGATAGTTGATGATGAATATGTGATAGTGGGGTCTGCCAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGTGCCTACCAACCTTATCATACTTGGGCAAGAAGACAGTTTTATCCACTTGGGCAGATCCATGGATATAGAATGTCACTTTGGGCAGAACATACAGGTACTATTGAAGACTGTTTTTCAGAACCAGAAAGCCTTGAATGTGTTAGGAGGATTAGAACAATGGGTGAACTGAACTGGAAACAATATGCATCAAATGATGCAACAGAGATGAAAGGGCATCTTCTCAAGTACCCTGTAGAAGTTGATAGAAAGGGTAAGGTAAGATCCCTTCCTGGTCAGGATGAGTTCCCTGATGTGGGTGGAAAGATTATAGGATCGTTTATTGCCATTCAGGAAAATCTAACCATTTGA 3060 0.4216 MDNYGSSQPPYGYPSPYFYPGNTPQYPPPDPYARPPYPYPPNAPDTFNYSYPPPSPPPSAPYSSHTRHFTYPSPSHPPPSPPSHDSYDISMPQSTDTYPYPDHDPPSSDSYKPPVVSIHPPLDDHMSIVRLSETTSTLALLTQSPSISNYYRDEFFGFSIYSPSDLDKEDPTRPSAQSDDSMSNQSLQIVPVQNKASLPVLLLHGNLDIWVHRAKHLPNMDMFHKTLGDVFGKLPVNVNKVDGTVSRKITSDPYVTISVSNAVIGRTSVISNSENPVWEQHFYAPVAHHVAEVHFVVKDSDVVGSQLIGVVAVPAEQIYSGEKINGNYPILNSSGKPCKPGAVLRLSIQYIPIEKLITYDQGVGAGPEYHGVPGTYFPLRKGGTVTLYQDAHVPSGSLPNVMLNHGLHYNHGKCWNDIFEAIRAAQRLVYITGWSVWHKVRLLRDTDNATDSTLGELLRTKSSEGVRVLLLVWDDPTSRSILGYKMDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWAKQKEVETIYTHHQKTVIVDADAGNGKRKIVAFVGGLDLCDGRYDNPHHPIFRTLETLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGLKKFTSSYDDALLKLDRIKDVISSSDDLDLDEDNNPASWHVQIFRSIDSNSVKGFPKVSRNASSANLVCGKNVLIDMSIHTAYIKAIRAAQHYIYIENQYFIGSSYNWSQYRDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREAVDVYENVTVSGNPPPANSPQAISRNNRRFMIYVHSKGMIVDDEYVIVGSANINQRSMEGTRDTEIAMGAYQPYHTWARRQFYPLGQIHGYRMSLWAEHTGTIEDCFSEPESLECVRRIRTMGELNWKQYASNDATEMKGHLLKYPVEVDRKGKVRSLPGQDEFPDVGGKIIGSFIAIQENLTI 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01728 1019 FunFam Phospholipase D delta 405 643 - -
Viun10g01728 1019 SMART pld_4 529 564 IPR001736 GO:0003824
Viun10g01728 1019 SMART pld_4 865 892 IPR001736 GO:0003824
Viun10g01728 1019 Pfam Phospholipase D Active site motif 866 892 IPR001736 GO:0003824
Viun10g01728 1019 Pfam Phospholipase D Active site motif 530 564 IPR001736 GO:0003824
Viun10g01728 1019 MobiDBLite consensus disorder prediction 13 61 - -
Viun10g01728 1019 CDD C2_plant_PLD 200 351 - -
Viun10g01728 1019 Pfam Phospholipase D C terminal 939 1009 IPR024632 -
Viun10g01728 1019 Gene3D Endonuclease Chain A 404 647 - -
Viun10g01728 1019 ProSiteProfiles C2 domain profile. 179 328 IPR000008 -
Viun10g01728 1019 FunFam Phospholipase D delta 200 346 - -
Viun10g01728 1019 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 203 353 IPR035892 -
Viun10g01728 1019 PANTHER PHOSPHOLIPASE D 197 1009 IPR015679 -
Viun10g01728 1019 MobiDBLite consensus disorder prediction 1 115 - -
Viun10g01728 1019 Pfam C2 domain 205 330 IPR000008 -
Viun10g01728 1019 FunFam Phospholipase D 678 911 - -
Viun10g01728 1019 SUPERFAMILY Phospholipase D/nuclease 377 629 - -
Viun10g01728 1019 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 865 892 IPR001736 GO:0003824
Viun10g01728 1019 SUPERFAMILY Phospholipase D/nuclease 685 951 - -
Viun10g01728 1019 Gene3D C2 domain 203 358 IPR035892 -
Viun10g01728 1019 SMART C2_3c 206 327 IPR000008 -
Viun10g01728 1019 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 529 564 IPR001736 GO:0003824
Viun10g01728 1019 MobiDBLite consensus disorder prediction 86 101 - -
Viun10g01728 1019 Gene3D Endonuclease Chain A 681 911 - -
Viun10g01728 1019 SUPERFAMILY beta-sandwich domain of Sec23/24 9 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01728 Viun-Chr10 32441558 32451061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01728 32 1019 Phospholipase D Gene Family (Wang group) AT2G42010 66.310 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01728 K01115 - gmx:100805294 1568.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01728 10 32441558 32451061 Viun10g01728 10 32441558 32451061 ECH