Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01718 ATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCAACAAGCCGGCAAGTAACTTTCTCGAAGCGGCGAAATGGGTTGCTGAAGAAGGCTTTTGAGTTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCACCAGCACGCAGCAGTCAATAGAACGATACCGCAGACATACCAAAACTGAAACCTCAACTTCATTCAGATCAGTTGACCAAAACATGCAGCATCTGAAGCTAGAAGCAGCAAACATGATGAAGAAGATTGAACTTCTTGAAGCTGCAAAACGGAAATTCTTGGGAGAAGGTGTGGGGTCTTGCTCCGTTGAGGAATTGCTACGGATTGAACAACAGTTGGAGAGGAGTTTAAGTATTGTTCGAGCAAGAAAGCTCCAGGTTTTCAGGGAACAAATTGAGCAACTCAAGCAAAAGGAAAAAGCCCTAACAGATGAAAATGCCAAGCTCACTGAAGATGTAAGGCTCACTGAGAAGCATGGCATGCATCTACAGGTAGCAGCAACAAAGGATCAGAATGAAAATCAACCCCAAAACTGTGCAGAAAGTAGTCCAAGTTCAGATGTGGTGACTGAATTGTTCATTGGACTTCCAGATACAAGAACAAATTTAGGCCTCTCTAATCAGGTCTAG 687 0.4352 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASTSTQQSIERYRRHTKTETSTSFRSVDQNMQHLKLEAANMMKKIELLEAAKRKFLGEGVGSCSVEELLRIEQQLERSLSIVRARKLQVFREQIEQLKQKEKALTDENAKLTEDVRLTEKHGMHLQVAATKDQNENQPQNCAESSPSSDVVTELFIGLPDTRTNLGLSNQV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01718 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Viun10g01718 228 Coils Coil 144 171 - -
Viun10g01718 228 FunFam MADS-box protein SOC1 14 96 - -
Viun10g01718 228 Coils Coil 88 108 - -
Viun10g01718 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun10g01718 228 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Viun10g01718 228 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Viun10g01718 228 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun10g01718 228 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Viun10g01718 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun10g01718 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun10g01718 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun10g01718 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun10g01718 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun10g01718 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun10g01718 228 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01718 Viun-Chr10 32314521 32331541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01718 1 159 MADS-box Gene Family AT2G45660 77.987 1.33e-85 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun10g01718 K-box 9.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01718 - - gmx:100807963 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01718 10 32314521 32331541 Viun10g01718 10 32314521 32331541 ECH