LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g01700	ATGCCATCGCGTCCGCCGCCAGCCTCGCCTCACACGGCGGTTGCCGCCGTCTCGCACCGTCGAGAGATGATTCTCTGCGGGGTAATCGGCGGCGCGCTCTTCTTAACGGCGCTTATCGTCTCTGTCACGGTCTTTCTCTACCGGAAACTTTCTTACAACCGAACGGCGCCGTTTGAGCACAACCAGCGACGTTTCTCTTACTCCGTTCTACGCCGCGCGACGAACTCGTTCTCGCCGTCGACGAAGCTCGGGCACGGCGGGTTCGGTTCGGTTCACAAAGCGACTCTGCCTTCCGGCCAGACTGTGGCGTTGAAGGTGATGGACTCGCCCGGGTCAATCCAGGGGGAGAGAGAGTTCCACAACGAGTTGACGCTGTGTTCGAATCTGAAGTCGCCGTTTGTTATTTCGTTGCTCGGTTTTTCGTCGGACCGGCGCGGTCGGAAGCTGGTTCTGGTTTACGAGCTGATGCCGAACCGGAGTTTGCAGGACGCGCTGCTGGACCGGCGGTGTCCGGAACTGATGTGTTGGGGGAAGAGGTTTGACATCGCCGTTTCGGTGGCGATGGGGTTGGAGTATTTGCACCATGCGTGTGAGCCTCCGGTGATTCATGGGGATATAAAGCCGAGTAATGTGTTGCTGGATGAGGATTTTGGAGCGAAGATTGGGGATTTTGGGCTTGCTAGGGTTAAGGCGGTGGAGGATCTGGGAATGGTGGAGGAGAAGAAGGAAGGGGTTGTGGAGATTGGGGTTGAGGAGTTTGGGGTGATGGAGGAGGGGGAGAGTGTGAGTGTGGTGGATGTTGACCGGTCGCCGGAGAGTTGTCCGGTGAGAGTTGTCGATTACTCGGACGCGTCGCCTGTGGGAGGTGATAAGTTGAGTGTGGTGTCGGATGGGTGCTTTGAGAGTGTTGATAGTGAGAACGTGAATTTGAATAAGAAGAAGGGTGGTGGTGGTTCAGGGAGGGATTGGTGGTGGAGGCAGGAGAGCGGGGGAGGGGGGGAATCGGGGAGGGTGAAGGATTATGTGATGGAGTGGATCGGGAGTGAGATTAAGAAAGAGAGGCCAAAGAGTGAATGGATTGATTCGTGTTCATCTTCTTCTCCTAAGGTGGAGAATGAGAATAGGAATGTTAATGGGAATGAGAAGAGTAAGAAGAAGGAGAGGAAGAGGTTGGATTGGTGGGCCTCTCTTGATGAGGAGAAGGTTAAGAGTAAGGTGAAGAAGAATCGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGTGAGGAGTTGTCTAAGAAGAGTAAGAAGAAGAAGAGGGGTTTGGAGTGGTGGCAGAGGGAGGAGGAAGGGGTGGAGCAGAAGAAGAAGAGGAAGAGCAAGGGGAGTAGGGGAAGTATTGATTGGTGGTTGGATGGGTTGAGTGGGGAGATAAGGAACAATGGGAGGAGGAACAGCCAGGATTGGGGGACTAGTGGGGATGTGCCAAAGAGTGGTGGGATCAGTAGCACCCCTAGTATGAGGGGGACTGTGTGTTACATTGCTCCTGAGTATGGTGGAGGAGGGCAATTGTCTGAAAAGTGTGATGTGTACAGTTTTGGGGTTCTGCTTTTGGTTCTGGTGGCGGGGAGGCGGCCGCTGCAGGTGACGGCATCGCCGATTTCTGAGTTTGAGAGGGCGAATTTGATTTCCTGGGCCAGGCAGCTTGCTCACAATGGGAGGCTCTTAGATCTTGTTGACACTTCTATTCATTCATTGGATAAGGAGCAGGCGCTGCTCTGCATCACCATAGCCTTGTTGTGTTTGCAGAGGTGCCCAGGGAAGAGGCCTTCCATGAAGGAGGTTGTGGGAATGCTCAATGGGGAAGCTGATCCACCACATTTACCGTTCGAGTTCTCACCATCACCGCCGTCAAATTTCCTGTTCAAGGGGCGGAAGAAGGCTCGGTGA	1929	0.5433	MPSRPPPASPHTAVAAVSHRREMILCGVIGGALFLTALIVSVTVFLYRKLSYNRTAPFEHNQRRFSYSVLRRATNSFSPSTKLGHGGFGSVHKATLPSGQTVALKVMDSPGSIQGEREFHNELTLCSNLKSPFVISLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMCWGKRFDIAVSVAMGLEYLHHACEPPVIHGDIKPSNVLLDEDFGAKIGDFGLARVKAVEDLGMVEEKKEGVVEIGVEEFGVMEEGESVSVVDVDRSPESCPVRVVDYSDASPVGGDKLSVVSDGCFESVDSENVNLNKKKGGGGSGRDWWWRQESGGGGESGRVKDYVMEWIGSEIKKERPKSEWIDSCSSSSPKVENENRNVNGNEKSKKKERKRLDWWASLDEEKVKSKVKKNRKPREWWKEEFCEELSKKSKKKKRGLEWWQREEEGVEQKKKRKSKGSRGSIDWWLDGLSGEIRNNGRRNSQDWGTSGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTSIHSLDKEQALLCITIALLCLQRCPGKRPSMKEVVGMLNGEADPPHLPFEFSPSPPSNFLFKGRKKAR	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g01700	642	SUPERFAMILY	Protein kinase-like (PK-like)	52	630	IPR011009	-
	Viun10g01700	642	MobiDBLite	consensus disorder prediction	360	374	-	-
	Viun10g01700	642	FunFam	Os07g0541700 protein	156	244	-	-
	Viun10g01700	642	Gene3D	Phosphorylase Kinase; domain 1	41	155	-	-
	Viun10g01700	642	ProSitePatterns	Protein kinases ATP-binding region signature.	83	105	IPR017441	GO:0005524
	Viun10g01700	642	MobiDBLite	consensus disorder prediction	311	334	-	-
	Viun10g01700	642	SMART	serkin_6	77	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g01700	642	Gene3D	Transferase(Phosphotransferase) domain 1	471	618	-	-
	Viun10g01700	642	Gene3D	Transferase(Phosphotransferase) domain 1	156	249	-	-
	Viun10g01700	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Viun10g01700	642	MobiDBLite	consensus disorder prediction	620	642	-	-
	Viun10g01700	642	MobiDBLite	consensus disorder prediction	474	495	-	-
	Viun10g01700	642	Pfam	Protein kinase domain	80	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g01700	642	Pfam	Protein kinase domain	481	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g01700	642	ProSiteProfiles	Protein kinase domain profile.	77	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g01700	642	PANTHER	OS07G0586332 PROTEIN	1	642	IPR044576	-
	Viun10g01700	642	MobiDBLite	consensus disorder prediction	357	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g01700	Viun-Chr10	32011158	32013714	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g01700	490	612	Receptor kinase-like Gene Family	AT3G58690	37.209	9.00e-14	71.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Viun10g01700		Pkinase	3.4e-26	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g01700	-		-	gmx:100814933	1008.44