LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g01693	ATGAACAATGAAACGACTCGCGCAGGGAAGAAGAGTAAGGAACAGTTCTGTTGTATTTCTCACGAATTCTTTCGAACAGCGTACGCAAACCCTAACAAAATCGCAGTGATTCACGCTACCGGCGGGGCGCACCTTTGCCGGGAGTTTCGCCGCGAAAATTCTGCCACCACCGACTTCAACGGCGACATTGCCACCCTCTTAGAGAAGCACGTCGAGTCCATATCTCCGCCATTTTACGACGGGGACCGGTGCTTCACTTACTCTCATGTCTTGGATGCGGTTCGTTCCCTCAGCTCACGCCTCCGCTCTATCCTGCTTGGTGGGGATGACCCACACTTGATCACTGCACAATCTCCAGGTAGCAATGGTGTCAACCGTGAAAAGAGAACTGTACAGAAACCTGAGTCCTTGGAAACTGTCATGCCCAGTGAAGAGGCGTTGGCTGAATCAAGTGAAGAGTATAGGCCAAAGATAGTGGGGATTTATATGCCTCCTTCTGTTGAATATATTGTAGCTGTCCTTTCGGTACTTAGGTGTGGGGAAGCCTTCCTGCCTCTGGATCCGTTTTGGCCAAATGAAAGGATATTGTTTGTTGCCTCTTCTTCAAATGTTGATCTCATTATAGGATCCCAATCTTCTTTTGGTAAAAGAAATTTGGAGAAGCTTGATGAATCACATTGGCTGGTAAAGTCAAGTAGTTGTCCCGTTTTGAATTACTCCATTGACCAAAAACTACTAGATTGTAGTGGTCCAACAAATTTAGCATGGCCATGTGCCAATGAAAAACAAAGATCATTCTGCTATGTGTTGTACACATCTGGATCAACTGGAAAACCCAAGGGAGTGTGTGGCACCGAACAAGGTCTTTCTAATCGCTTTTCATGGATGCAAGGAATGTATCCTCTGAATGGACAGGAACTGTTGTTGTTTAAGTCATCAGTTAGCTTCATTGATCACCTACAAGAATTTCTCAGTGGTATTTTGACTGCTTGTGTATTGGTTATTCCTCCTTTCAACGAGCTAAAAGAAAATTTGTATTCTATTATAGATTTCCTGCAGGCATATTTTATTAATAGGCTCACGGCTGTTCCATCACTAATGAAGACTATTCTTCCTGGATTGAAAACCAATGCTAACATGGCGGTTGAAAATTCACTGAAATTGCTTGTGCTTAGTGGTGAAACTTTTTCTTTGACCTTGTGGGAGATTCTTTCAACTATATTACCGAAGACATCAATCTTGAATTTATATGGAAGCACTGAGGTCTCTGGTGACTGTACATATTTTGATTGCAAGAGAATGCCATTGATTTTTAAGGAAGAAAGGCTAACCAGTGTTCCAATAGGTTTACCCATTCCTAACTGTGATGTGATTCTTCTTAGTGAAAATGGTGCATCAAATGAGGGAGAGCTATATGTTGGTGGTCATTGCATCTTTAGGGGTTACTACAATGAATTTAAGGAAATGTCTTATGCATTTGCAAAGTTGCTTCCACGTTACAGTTGTGGTGATTTTGTTAAAGGATGCCAAGATCAATTATACTTTAGAACAGGTGATTTAGTCAAACAGTTGCCTAGTGGTGACTTTGTATTTTTGGGAAGAAAAGATCGCATTGTAAAAATCAACGGACAGCGAATTGCCCTAGAAGAGGTTGAAGATTTGTTAAGAAAGCATCCACATATAAACGATGCTGCTGTAGTTTGTCGAAATAATAAAGCAGAACTTATGCTTGTTGAAGCCTTTATCATACTGAAGAAAAAAGAAAGCTTGGGTGAATCATTAGTACCTGCAATCAGAAGTTGGATGATGAACAAACTTCCTTCTGTTGTACTTCCCAATCGTTTCTTCTTCATAGAATCATTCCCCCTGTCTTCTAGTGGTAAGGTTAATTATGAGTTATTGGTTGGCTCAGAATTATTGACAAAGAATGTCAAAGATGAAGTTGGTAACATTGATTGCGGCAATCTTTTGCAACTTATTAAAAAGGCATTTCATGATGCTTTGATGATTGAAAAGGTTTGTGATGTTGATGATGATTTCTTTATGATGGGCGGTAACTCTCTTTCTGCTGCACATGTTGCTTACAGTTTGGGGATTGACATGAGATTTCTTTACTACTATCCAAGTGCTCTTAAGCTTTGCATGGCTCTTCTCCAAAAAAAAGGATCTTGCACTTTGCATAACAGTCTGGACTGTTGTTTGCAAATAAACACAGACAGACAAGATAACCATATTTCTACTAATCATACTGAAAATTCTAGTCCTCTTGAGTCTAGGATGACATCCAAAGATAACAATGATGGTCCTATTCCTTCTAAACGTTTAAAGAGGGGTTTGACCAATGTTACATCATGGGATGATGAATCACTCCCATGGTATTCCCCTTCACTATTATCATTCTCATTGAACCGATGCAACAAGGTGTTGCATAAAGGACAGCTGCAAGTAATTGATATGCACCAAAATACTTGGTTTGCAGACATTCCAAGAGGCAACAGAGGTCACATGAAAGACTTTTGGAAAGTTTACATGGAATCTTGTGTCGATGCTTCACCGATGCTTGTGTTTAAAGGCACACACATTTATTTGTTCATTGGATCTCACTCTCATAAATTTCTCTGCATAAATGCTAGAAGTGGTTCTGTCCAGTGGGAGATCAAACTAGAAGGGCGCATTGAAAGTACAGCAGCAATTGTTTCTGATTTTTCCCAGGTTGTTGTTGGTTGTTACAATGGAAAAATATATTTTCTTGATTTTTTGAATGGACACATCTGTTGGATTTTCCAAACTTCTGGTGAGGTAAAATCACAGCCGGTTGTAGACAAACGCAGACAATTGATCTGGTGTGGCTCACATGATCGTAACTTATATGCTCTTGATTACAAAAAGCATTGCTGTGTGTTCAAGCTACCATGTGGAGGCAGTATATATGGGTCACCTGCAATTGATGAGGCTCGTGACTTGCTTTATGTGGCGTCCACTGGTGGTCGTATCACAGCTATATCAATATCGGCTTCTCCTTTTACTATTTTGTGGCTAAATGAATTAGAAGTTCCTGTGTTTGGTTCTCTTGCAGTCGCCCACAATGGAACTGTGATATGTTGCTTGGTGGATGGTCATGTTTTTGCATTGAGTCCAAATGGCTCCATTGTTTGGAAGAAAACAACTGATGGTCCAATATTTGCTGGGTCATGCATACCTTCTGTTCTTCCTGATGAGGAGGAGGGGGACCTACTATGGGAATACAATGTTGGACATCCAATTACAGCATCTGCTTATGTCGACGAGCACTTGCTGCTGGAGTCTGATGCTTCCAATTCCTCGGACAGGTTAATTTGCATTTGTTCCAGTTCTGGAGGCATACACCTTCTTCGAGTGAACATGAATACTAATTCCTCCAAAGATGCTTATCAACAAAGAAGCTATGTGGAAGAATTTGCAAGGCTAAACTTGGCAGGGGATATATTCTCTTCACCTTTAATGATTGGTGGTCGGATTTTTGTTGGTTGTCGAGATGACTACTTGCATTGTATTGCCCTTGAAATTCCAAAACAACATGAAACTTAA	3567	0.4057	MNNETTRAGKKSKEQFCCISHEFFRTAYANPNKIAVIHATGGAHLCREFRRENSATTDFNGDIATLLEKHVESISPPFYDGDRCFTYSHVLDAVRSLSSRLRSILLGGDDPHLITAQSPGSNGVNREKRTVQKPESLETVMPSEEALAESSEEYRPKIVGIYMPPSVEYIVAVLSVLRCGEAFLPLDPFWPNERILFVASSSNVDLIIGSQSSFGKRNLEKLDESHWLVKSSSCPVLNYSIDQKLLDCSGPTNLAWPCANEKQRSFCYVLYTSGSTGKPKGVCGTEQGLSNRFSWMQGMYPLNGQELLLFKSSVSFIDHLQEFLSGILTACVLVIPPFNELKENLYSIIDFLQAYFINRLTAVPSLMKTILPGLKTNANMAVENSLKLLVLSGETFSLTLWEILSTILPKTSILNLYGSTEVSGDCTYFDCKRMPLIFKEERLTSVPIGLPIPNCDVILLSENGASNEGELYVGGHCIFRGYYNEFKEMSYAFAKLLPRYSCGDFVKGCQDQLYFRTGDLVKQLPSGDFVFLGRKDRIVKINGQRIALEEVEDLLRKHPHINDAAVVCRNNKAELMLVEAFIILKKKESLGESLVPAIRSWMMNKLPSVVLPNRFFFIESFPLSSSGKVNYELLVGSELLTKNVKDEVGNIDCGNLLQLIKKAFHDALMIEKVCDVDDDFFMMGGNSLSAAHVAYSLGIDMRFLYYYPSALKLCMALLQKKGSCTLHNSLDCCLQINTDRQDNHISTNHTENSSPLESRMTSKDNNDGPIPSKRLKRGLTNVTSWDDESLPWYSPSLLSFSLNRCNKVLHKGQLQVIDMHQNTWFADIPRGNRGHMKDFWKVYMESCVDASPMLVFKGTHIYLFIGSHSHKFLCINARSGSVQWEIKLEGRIESTAAIVSDFSQVVVGCYNGKIYFLDFLNGHICWIFQTSGEVKSQPVVDKRRQLIWCGSHDRNLYALDYKKHCCVFKLPCGGSIYGSPAIDEARDLLYVASTGGRITAISISASPFTILWLNELEVPVFGSLAVAHNGTVICCLVDGHVFALSPNGSIVWKKTTDGPIFAGSCIPSVLPDEEEGDLLWEYNVGHPITASAYVDEHLLLESDASNSSDRLICICSSSGGIHLLRVNMNTNSSKDAYQQRSYVEEFARLNLAGDIFSSPLMIGGRIFVGCRDDYLHCIALEIPKQHET	1188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g01693	1188	Pfam	PQQ enzyme repeat	905	939	IPR002372	-
	Viun10g01693	1188	Gene3D	-	127	535	IPR042099	-
	Viun10g01693	1188	PANTHER	BETA-ALANINE-ACTIVATING ENZYME	15	1181	-	-
	Viun10g01693	1188	Gene3D	-	536	641	IPR045851	-
	Viun10g01693	1188	Pfam	AMP-binding enzyme C-terminal domain	550	628	IPR025110	-
	Viun10g01693	1188	FunFam	Putative acyl-activating enzyme 19	1006	1181	-	-
	Viun10g01693	1188	ProSitePatterns	Putative AMP-binding domain signature.	269	280	IPR020845	-
	Viun10g01693	1188	Gene3D	-	1069	1181	IPR015943	GO:0005515
	Viun10g01693	1188	CDD	A_NRPS	155	634	-	-
	Viun10g01693	1188	SMART	ire1_9	852	887	IPR018391	-
	Viun10g01693	1188	SMART	ire1_9	1024	1055	IPR018391	-
	Viun10g01693	1188	SMART	ire1_9	896	929	IPR018391	-
	Viun10g01693	1188	Pfam	AMP-binding enzyme	158	541	IPR000873	-
	Viun10g01693	1188	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	840	1178	IPR011047	-
	Viun10g01693	1188	FunFam	Putative acyl-activating enzyme 19	826	1005	-	-
	Viun10g01693	1188	SUPERFAMILY	Acetyl-CoA synthetase-like	79	635	-	-
	Viun10g01693	1188	MobiDBLite	consensus disorder prediction	744	768	-	-
	Viun10g01693	1188	MobiDBLite	consensus disorder prediction	744	773	-	-
	Viun10g01693	1188	Gene3D	-	828	1006	IPR015943	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g01693	Viun-Chr10	31939714	31957637	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g01693	262	629	Monolignol Biosynthesis Gene Families	AT4G19010	23.822	3.97e-16	81.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g01693	K00142		-	gmx:100820175	1957.57