Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01676 ATGGACGAAAACTCGGAACGACAATGGTGCCTCCGTGACTTCGAGATCGGAAAGCCTCTCGGAAAAGGGAAATTCGGCAGAGTTTATGTCGCCAGAGAACGCAAGAGCAAATTTGTTGTTGCATTGAAGGTTATTTCGAAGGAGCAACTAGAGAAGTACAAAATCCATCATCAACTGAGGAGGGAGATGGAGATTCAGTTCAGTCTTAAGCATCCGAACATCCTTCGTCTGTATGGCTGGTTTCATGACTCTGAGAACGTCTTTTTGATCCTGGAATATGCTCACAATGGTGAGCTTTACAAGGAGCTTAGCAGAAAAGGGCATTTCAGCGAGCAACAAGCTGCCACGTATATTTTAAGCCTCACAAAGGCATTGGCATATTGTCACGAGAAGCATGTCATTCACAGGGATATCAAGCCTGAAAATTTGTTGCTTGATCATGAGGGTCGTCTAAAGATTGCAGACTTTGGTTGGTCAGTACAGTCAAGAAGCAAAAGACATACCATGTGTGGAACCTTGGATTATTTAGCACCCGAAATGGTAGAAAACAAAGCTCACGATTATGCAGTTGATAACTGGACTCTAGGTATCCTTTGCTATGAATTCCTTTATGGTGCTCCTCCATTTGAGGCTGAGAGTCAAGTTGATACCTTCAGAAGGATAATGAAGGTTGACTTAAGTTTCCCCTCTACTCCTTATGTTTCTTCAGAAGCCAAACATCTTATTAGTCGGCTTCTGGTAAAGGACTCTTCACGAAGGCTCTCTCTTCAGAGAATAATGGAGCATCCTTGGATAATCAAGAATGCAAATGCTATAGGTGTCTGCAGCTAG 831 0.4308 MDENSERQWCLRDFEIGKPLGKGKFGRVYVARERKSKFVVALKVISKEQLEKYKIHHQLRREMEIQFSLKHPNILRLYGWFHDSENVFLILEYAHNGELYKELSRKGHFSEQQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEAESQVDTFRRIMKVDLSFPSTPYVSSEAKHLISRLLVKDSSRRLSLQRIMEHPWIIKNANAIGVCS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01676 276 CDD STKc_Aurora 13 265 - -
Viun10g01676 276 Gene3D Transferase(Phosphotransferase) domain 1 98 273 - -
Viun10g01676 276 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01676 276 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Viun10g01676 276 PIRSF ILK 3 269 - -
Viun10g01676 276 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Viun10g01676 276 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Viun10g01676 276 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 4 274 IPR030616 GO:0004672
Viun10g01676 276 FunFam Aurora kinase A 6 97 - -
Viun10g01676 276 SMART serkin_6 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01676 276 ProSiteProfiles Protein kinase domain profile. 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01676 276 FunFam Serine/threonine-protein kinase ark1 6 274 - -
Viun10g01676 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01676 Viun-Chr10 31661055 31666057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01676 6 268 CBL-interacting serine-threonine protein kinases AT5G10930 40.741 6.10e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Viun10g01676 Pkinase 3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01676 K08850 - gmx:100775802 516.153