Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01661 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTTGCACCAAGGAGTGAAGCACCAAATCAGGTTCATGTCCCTGATGGTGGTGGTGGCGGCGGCGGCGGTGGTGGCGGCATTGGTGGTGCTCCAGGTATTGGAATCTCACCGGTGAGTGTGGGGTTGGATGGAACAGCAAAGAAGAAACGAGGTAGACCAAGGAAATATGGACCTGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCGTCATCTGCACCATCTTCTAATGATTTTTCATCTGGCAAGAGGGGGAAAATGCGGGGAATGGAGTATAAACAGTCGAAAAAACTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAATTTTATGCCACACATCATCACTGTCAATGCTGGTGAGGACATTACAATGAAGGTGATATCCTTCTCTCAACAAGGGCCAAGAGCTATTTGTATTTTATCTGCTAATGGTGTAATTTCTAATGTTACACTTCGACAACCTGATTCTTCTGGGGGCACTTTAACTTATGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGTTCATTCATGCCTACTGACAACCAAGGTACAAGAAGCAGGTCTGGTGGAATGTCTGTCTCTCTGGCTAGCCCCGACGGCCGTGTCGTCGGCGGTGGAGTCGCCGGTCTCCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAGCAGAAACTAAAGAAGCCTAAGTCTACTGATTATGCAGCAGCAGCAGCAGCTGTTTCTCCGGTTATTGCCGTGTCTCCTACACCACCGGTGGCGGCGGCGCCGCCGCCGCCTCCACCGACCAATGCTGAAAAAGAGGATGTGAATGTGAATATTAATGTAATGAGTGGAGCACATGTGCTGCAAAATTCTGGGAGTCTTAACCCTAACCTGAGTCCTCCAAATGCCTTTAGAAGAGAGAGCTGGGTGAACATGCACTCTATGGCAGACTCAAGAAAGTCAGCTACTGATATTAACATATCTTTGCCTGATTGTTAA 1101 0.4832 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGGGGGGGGIGGAPGIGISPVSVGLDGTAKKKRGRPRKYGPDGSVTMALSPMPISSSAPSSNDFSSGKRGKMRGMEYKQSKKLGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKLKKPKSTDYAAAAAAVSPVIAVSPTPPVAAAPPPPPPTNAEKEDVNVNINVMSGAHVLQNSGSLNPNLSPPNAFRRESWVNMHSMADSRKSATDINISLPDC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01661 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 260 - -
Viun10g01661 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 255 IPR005175 -
Viun10g01661 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 324 IPR039605 GO:0003680
Viun10g01661 366 MobiDBLite consensus disorder prediction 30 111 - -
Viun10g01661 366 CDD DUF296 142 232 IPR005175 -
Viun10g01661 366 MobiDBLite consensus disorder prediction 89 107 - -
Viun10g01661 366 FunFam AT-hook motif nuclear-localized protein 1-like 142 273 - -
Viun10g01661 366 Gene3D - 142 273 - -
Viun10g01661 366 ProSiteProfiles PPC domain profile profile. 137 279 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01661 Viun-Chr10 31418850 31423415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01661 10 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.108 1.53e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01661 - - gmx:100793726 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01661 10 31418850 31423415 Viun10g01661 10 31418850 31423415 ECH
Viun5g01073 5 7507037 7511671 Viun10g01661 10 31418850 31423415 PCT