Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01628 ATGGAAGATGACCAACCTGCCAAGTCTACTGAAAAACAGCAACCTGAACAAGTTTGTAGTTTTTTCAGAAAACCGATAAATAAAAAGAATATAAGGAAGCGGACTATTGATGATGAGGACAATGAGGAGGACTCAAACAAAGAAACTTCTCTGTTGCATATTCAAAAGAAAACCTTAAAGCCTGACAACAAGTTGTTCTTTTCCACGGGCTCGTCAAAAAGTTCTGTATCTGCTGAACCAAGTGAAGAGTCTGGAAAACCAGTCTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGAGTTTTCGAGAGATGCTCGTGCCATCCGTGAAAGAGCTCTCAAGCAAGCATCAGAGAGTCTGAAAGGGAAAAGTGCAAGGCCTGAGGATGAAAAATTATATAAGGGGATGAACAGTTACAAAGACTACAAGGCTGGCTTCCGTAGAGAACAAACCATTGCTAGTGAAAAAGCTGGTGGAGCACATGGTCCTCTGAGGGCTTCGGCGCATATTAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGACTATAAGGAAACTGGTTATTGTGGATATGGCGACTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAAGACGCAGACGTGGTGGAGGGTGCCAATTTGAGTGATGAAGATGACGAGGATTCATTACCTTTTGCATGTTTCATCTGCAGAAACCCCTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTAGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGGTGGCCGAGGATAAATAG 987 0.4286 MEDDQPAKSTEKQQPEQVCSFFRKPINKKNIRKRTIDDEDNEEDSNKETSLLHIQKKTLKPDNKLFFSTGSSKSSVSAEPSEESGKPVFQFESSKEIQVQHDSKATATLETETEFSRDARAIRERALKQASESLKGKSARPEDEKLYKGMNSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARKMRLAAGEDADVVEGANLSDEDDEDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKVAEDK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01628 328 FunFam RING finger protein 113A 267 326 - -
Viun10g01628 328 SMART ring_2 269 306 IPR001841 -
Viun10g01628 328 FunFam Zinc finger CCCH domain-containing protein 1 189 223 - -
Viun10g01628 328 MobiDBLite consensus disorder prediction 62 106 - -
Viun10g01628 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Viun10g01628 328 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Viun10g01628 328 MobiDBLite consensus disorder prediction 31 60 - -
Viun10g01628 328 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Viun10g01628 328 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Viun10g01628 328 Gene3D - 189 223 - -
Viun10g01628 328 SUPERFAMILY RING/U-box 268 311 - -
Viun10g01628 328 CDD RING-HC_RNF113A_B 262 315 - -
Viun10g01628 328 MobiDBLite consensus disorder prediction 1 112 - -
Viun10g01628 328 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Viun10g01628 328 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Viun10g01628 328 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Viun10g01628 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Viun10g01628 328 PANTHER ZINC FINGER PROTEIN 183 12 328 IPR039971 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01628 Viun-Chr10 31269777 31273473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01628 2 328 C2H2 Transcription Factor Family AT1G01350 67.584 5.43e-164 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun10g01628 zf-C3HC4_3 8.8e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01628 K13127 - gmx:100787434 598.586