Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01612 ATGCATATATGGTTATATTCTGTTATATGTGTTGTTCTGGGGTCAGGTGTTATTCTTCGTGACTCTCATGGAATTGCTCAGGTGAAGAGTGTCACTGGAAGCAAGATTTTTCGTATATTGAAAGCCCATGGGCTTGCTCCTGAAATTCCTGAGGATTTGTATCACCTGATCAAAAAGGCTGTCTCCATTAGGAAGCCCTTGGAGAGGAATAGGAAGGACAAGGATTCTAAATTCAGTTTAATTTTGGTTGAGAGTAGGATTCACCACCTTTCCCGTTACTACAAGAAGACTATGAAGCTTCCACCTGTGTGGAAATAG 318 0.4119 MHIWLYSVICVVLGSGVILRDSHGIAQVKSVTGSKIFRILKAHGLAPEIPEDLYHLIKKAVSIRKPLERNRKDKDSKFSLILVESRIHHLSRYYKKTMKLPPVWK 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01612 105 PANTHER RIBOSOMAL PROTEIN S15P/S13E 16 105 IPR023029 -
Viun10g01612 105 SMART Ribosomal_S15_2 35 105 IPR000589 GO:0003735|GO:0005840|GO:0006412
Viun10g01612 105 Gene3D - 48 105 - -
Viun10g01612 105 Pfam Ribosomal protein S15 39 97 IPR000589 GO:0003735|GO:0005840|GO:0006412
Viun10g01612 105 CDD Ribosomal_S15p_S13e 35 105 IPR000589 GO:0003735|GO:0005840|GO:0006412
Viun10g01612 105 Gene3D - 15 47 - -
Viun10g01612 105 FunFam 40S ribosomal protein S13 48 105 - -
Viun10g01612 105 SUPERFAMILY S15/NS1 RNA-binding domain 31 104 IPR009068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01612 Viun-Chr10 31154276 31156012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01612 16 105 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 91.111 5.39e-54 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01612 K02953 - mnt:21387865 167.933