Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01611 ATGAAACCACAATTCCATGCCAGAACAAAAAGCTTTTTTCAGAGTGGATGGGGAGGTAGAAATATCTCGGAATACTGTAAATGGAATGGTATTGTGTGCAATGAAGCTCAAAGTGTTACAGAGATTTCAACTAAGAAATATTTTTATATTCCTTCAACAAAAGCTCATATTCAGCATTTCAATGTGGCTGCATTCCCTGATTTAATCAGTCTAGAGCTTAGTGGATCAGGACTCAAAGGAAACATTCCTTCAGAAATAAGCTCCCTGAAGAAACTTCTCCATCTTGATTTGTCTTCTAATTTTCTTCAAGGTGAGTTATCTAGTTCTCTTTCAAGTCTCACTCAACTTCAAACACTTAACATTTCTAATAATCTTCTTACTGGTGTGATCCCTTCTACTTTGGGCCAGTTGAAGAATTTGATCCTACTCTCCCTTGACTCAAACCAGATTAATGGCCACATTCCTTCAGAACTAGGGAGTTTAAGAGGTTTGGAGCAGTTAACTCTTTCAAATAACTCACTCAATGGCTCAATCCCTTCTACTTTAGAGCATTTGATCCATCTCAAAGTTTTGGATCTTTCTCATAATAAGATTTCTGGTGTTATACCAGAAGGGATATCTGCACTGACAGAACTAACTAGTGTTCAACTTTCTTGGAATCAAATAACTGGTTCTATTCCACCTGGGATTGGGAAAATCCTAAGACTTCAAAGTTTAGATATTTCCAACAATCATCTTCAGGGACATGTCCCAGATGATGTTTTAGAGCATTGTCAGTATCTGCAGTTAAGGAACAACTCTTTAAATGGGAGCATTCCTTCTCAAGTAGGAAATATTTCATATCTAGATCTTAGTTATAATGATCTCACTGGCAACATACCTGAGGCCCTTCATTCTGTTTCTCACCTTAATTTGTCTTACAACTCCTTTAATGCTTCAGATCACAGTTTTTGTGGTTTTCCAAAAGACTCTTTAATTGGTAACAAGGGTATGAAAGATTCTTGCTCTTTTAATGTTGATGTTTCTGATGCTGACATTTCTCTTGTAATGATACTTGTCTTTTCTACCTTCAATGGCATGATTTTCTCAATGGTCCTTGTCTGTTGGGGAATTCATGTTTTCTGTCCCCTGCATAATGAGTTTGGAAATGAGCAAAGAAGAAAGAATGGAGACATGCTTTCAATTTGGAACTATGATGGTAAGATTGCATTTGAAGACATAATTAAGGCCACAGAAGATTTTGATATAAGGTACTGCATAGGAACAGGTGCTTATGGGAGTGTGTACAAAGCAGAACTTCCCAGTGGCAGAATTGTTGCACTGAAAAAACTTCACGAAGCAGAATCTGAAAATCCATCCTCTTACAAGAGCTTTTGCAATGAAACCAAGATCTTGACAGAAATTCGCCATCGTAACATCATCAAGCTCTATGGCTTTTGCTTGCATAACAAGTGCATGTTTTTGGTGTATGAGTACATGGAAAGAGGAAGCTTATTTTGTAACTTGTCTTATGATGTTGAAGCTCAAGAGCTGAATTGGAGCAAGAGGATAAATGTTGTAAAAGGAATAGCCTATGGCTTGGCTCACATGCACCATGATTGTACACCACCAATTGTTCATAGAGACATAAGCAGTAACAACATTTTGTTAAACTCAGAGTTGCAGGCTTTCATCTCAGACTTTGGCACTGCAAGACTTCTTGATTTGCATTCATCGAATCAGACTCTTCCTGCTGGTACTTATGGATATGTTGCTCCAGAATTGGCTTACACCTTGAGTGTGACCACCAAATGTGATGTTTATAGCTTTGGAGTAGTGGTTTTGGAAACAATGATGGGTAGACATCCAGCTGAATTGATTTCTTGTTTATCAGAACCATCCATTCAGAAGAAGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCACATTTTAGAAAAGATATGCAAGATATTGTGCTTGTTGTAACGTTGGCCTTAGCATGTTTGAGTCCACACCCAAAATCCAGACCATCAATGCAGGAAATAGCTAATGAGCTTTTAGCTTCCAAGCCACCATTGCTTTGGCATTTTGATAGCATTTCCATTCACCAACTCATAAAGCAAAAAATATATATAATTGGCAGAAGTTAG 2136 0.3764 MKPQFHARTKSFFQSGWGGRNISEYCKWNGIVCNEAQSVTEISTKKYFYIPSTKAHIQHFNVAAFPDLISLELSGSGLKGNIPSEISSLKKLLHLDLSSNFLQGELSSSLSSLTQLQTLNISNNLLTGVIPSTLGQLKNLILLSLDSNQINGHIPSELGSLRGLEQLTLSNNSLNGSIPSTLEHLIHLKVLDLSHNKISGVIPEGISALTELTSVQLSWNQITGSIPPGIGKILRLQSLDISNNHLQGHVPDDVLEHCQYLQLRNNSLNGSIPSQVGNISYLDLSYNDLTGNIPEALHSVSHLNLSYNSFNASDHSFCGFPKDSLIGNKGMKDSCSFNVDVSDADISLVMILVFSTFNGMIFSMVLVCWGIHVFCPLHNEFGNEQRRKNGDMLSIWNYDGKIAFEDIIKATEDFDIRYCIGTGAYGSVYKAELPSGRIVALKKLHEAESENPSSYKSFCNETKILTEIRHRNIIKLYGFCLHNKCMFLVYEYMERGSLFCNLSYDVEAQELNWSKRINVVKGIAYGLAHMHHDCTPPIVHRDISSNNILLNSELQAFISDFGTARLLDLHSSNQTLPAGTYGYVAPELAYTLSVTTKCDVYSFGVVVLETMMGRHPAELISCLSEPSIQKKKLKDILDSRIPLPHFRKDMQDIVLVVTLALACLSPHPKSRPSMQEIANELLASKPPLLWHFDSISIHQLIKQKIYIIGRS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01611 711 SMART LRR_typ_2 297 319 IPR003591 -
Viun10g01611 711 SMART LRR_typ_2 161 184 IPR003591 -
Viun10g01611 711 SMART LRR_typ_2 233 257 IPR003591 -
Viun10g01611 711 SMART LRR_typ_2 137 160 IPR003591 -
Viun10g01611 711 SMART LRR_typ_2 185 208 IPR003591 -
Viun10g01611 711 SMART LRR_typ_2 209 232 IPR003591 -
Viun10g01611 711 SMART LRR_typ_2 89 112 IPR003591 -
Viun10g01611 711 SMART LRR_typ_2 113 136 IPR003591 -
Viun10g01611 711 Gene3D Ribonuclease Inhibitor 155 337 IPR032675 -
Viun10g01611 711 FunFam Nuclear pore complex protein NUP107 1 155 - -
Viun10g01611 711 SUPERFAMILY Protein kinase-like (PK-like) 396 681 IPR011009 -
Viun10g01611 711 Gene3D Ribonuclease Inhibitor 1 154 IPR032675 -
Viun10g01611 711 Pfam Leucine Rich Repeat 115 135 IPR001611 GO:0005515
Viun10g01611 711 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515
Viun10g01611 711 ProSiteProfiles Leucine-rich repeat profile. 187 210 IPR001611 GO:0005515
Viun10g01611 711 ProSitePatterns Protein kinases ATP-binding region signature. 420 442 IPR017441 GO:0005524
Viun10g01611 711 FunFam Leucine-rich repeat receptor protein kinase MSP1 378 492 - -
Viun10g01611 711 FunFam MDIS1-interacting receptor like kinase 2 493 687 - -
Viun10g01611 711 PRINTS Leucine-rich repeat signature 188 201 - -
Viun10g01611 711 PRINTS Leucine-rich repeat signature 233 246 - -
Viun10g01611 711 Pfam Protein kinase domain 419 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01611 711 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 99 683 - -
Viun10g01611 711 FunFam Leucine-rich receptor-like protein kinase family protein 156 252 - -
Viun10g01611 711 ProSitePatterns Tyrosine protein kinases specific active-site signature. 538 550 IPR008266 GO:0004672|GO:0006468
Viun10g01611 711 ProSiteProfiles Protein kinase domain profile. 414 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01611 711 SUPERFAMILY L domain-like 54 310 - -
Viun10g01611 711 Gene3D Transferase(Phosphotransferase) domain 1 493 687 - -
Viun10g01611 711 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Viun10g01611 711 Gene3D Phosphorylase Kinase; domain 1 379 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01611 Viun-Chr10 31148770 31152103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01611 68 586 Receptor kinase-like Gene Family AT4G08850 39.450 6.39e-115 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun10g01611 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01611 - - vun:114165534 1418.29