Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01609 ATGGCTGAGCTATCATCTGTGATTGGCAGCATGTCTCCTTCTTCCATCAATCAAGAACGACAAGCATTGCTCCACAGTGGTTGGTGGAATGATTACCAAAATATCTCATCAGACCATTGTCATTGGCCGGGTATCTTTTGCAATGAAGCTGGAAGTGTTACTTACATTTACAGTGGGTCCATGAAGATTCCTTCATCAAAAGAATTGCTTTGGATTGTGAACTTAAATATCACTGCCTTCCCCAATTTAGTGAATTTGGATCTAAGTGGAATGGGTCTTAGAGGAAGCATCCCCACAGAAATAGGCTCACTTACAAACCTTACCTCTCTTGTCCTGTCCAACAATCGTCTCCAAGGTTCAATCCCTCCTACTTTAGGTCGATTGGAGAAATTGGTACATCTCTATCTTCATTCTAATCAAATAGAAGGCCACATACCCGAAGAATTAGGAAATTTGTCCAGATTGGAACTTTTGCAACTATCTCATAATAAGATTTCGGGTTTATTACCTCCAAAACTTTTGGAAATGGACCAAATGTCTTCTTTAAATCTCTCGTCAAATCAATTATGTGGTTCAATCCCATTAAAAACCATGAGATGTCCCTTTGCTTCAATAGTTGATTTGAGCCATAACTTGTTTAATGGAAACATAACCTCTCAAATTGGTTGTGTACATGACCTTAATCTTAGTCACAATTTTCTTGATGGTGAGATTCCATTTCTTTTTACATGGAGCTCCGAACTTAGTCGATTGGATCTCAGTTATAATAATCTCTCAGGTAAAGTACATAAGGAACTTGCTAGTCTATCATACATAAACCTTTCGTACAATTCCTTTGATTTCTCACAAAATCTTAACTCAGTATCAGAGGTACCAAACTACTGTTTTTTTCATGAAGATTCATTAATCAATGATCACCGCATGCCCAATTTCACATACTGCCACTTGCTCAACCAAACAAATGCTCAAACTAGGAAAAGTAAGCTTGTAATCATGTTAATTGTCCTTCCTATCATTTTCTTCAATCTTTTACTACTCCTTTCAATATTATATTTCTCAAGATGTAAGCCTAAGAAAAAGTGTGAAGGAATAGCAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACTGAAGACTTTGACCTCAAGTACTGTATTGGGACTGGCGCATATGGCAGTGTTTATAGAGCACAACTACCCAGTGGAAATATTGTTGCGTTAAAAAAGCTCCACCGTGTGGAATCTCAAAACCCATCATTTGACAAAAGTTTTCGGAATGAGGTGAAGATGTTAACAGAAATCCGTCATAAAAATATCGTAAAGCTTCATGGCTTTTGCCTCCACAACCGGTGCATGTTTCTGGTATATCAATACATGGAAAGAGGTAGTCTATTTTATATTTTGAATAATGAGGTGGAAGCTAAGGAGCTGAATTGGAGTAAGAGGGTAAATGTGATTAAAGGGATGGCACAAGCTTTATCCTACATGCATCATGATTGTACCACACCAATTGTTCATCGAGACGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGCACCTATGGCTACATTGCTCCAGAGCTTGCTTATACATTGAGTGTGACAGAAAAGTGTGATGTTTATAGTTTTGGAGTGGTGGCTTTGGAAATGTTAATGGGAAAACATCCAAGAGAGTTAATCTCATCTTTATCCAACCCAACTACTCAAAATATGTTGGTGAGCGATCTTTTGGATTCACGTCTTCCTCTCCCTCTTCAAAAAGATGCTCCAGATATAGATCTTGTGGTAAATATAGCACTATCATGTTTATGCTCCAAGCCAAACTTGAGGCCATCAATGCAACAAGTTGCTGAGAAACTCTCTAGTTTCAAATTACAAATGCCCTTCCATGAAGTTTCTATCCATCAAGTGATCGGTCAAGACATATTTTAA 2049 0.3768 MAELSSVIGSMSPSSINQERQALLHSGWWNDYQNISSDHCHWPGIFCNEAGSVTYIYSGSMKIPSSKELLWIVNLNITAFPNLVNLDLSGMGLRGSIPTEIGSLTNLTSLVLSNNRLQGSIPPTLGRLEKLVHLYLHSNQIEGHIPEELGNLSRLELLQLSHNKISGLLPPKLLEMDQMSSLNLSSNQLCGSIPLKTMRCPFASIVDLSHNLFNGNITSQIGCVHDLNLSHNFLDGEIPFLFTWSSELSRLDLSYNNLSGKVHKELASLSYINLSYNSFDFSQNLNSVSEVPNYCFFHEDSLINDHRMPNFTYCHLLNQTNAQTRKSKLVIMLIVLPIIFFNLLLLLSILYFSRCKPKKKCEGIATKNGDLFSIWNYDGKIAFEDIIEATEDFDLKYCIGTGAYGSVYRAQLPSGNIVALKKLHRVESQNPSFDKSFRNEVKMLTEIRHKNIVKLHGFCLHNRCMFLVYQYMERGSLFYILNNEVEAKELNWSKRVNVIKGMAQALSYMHHDCTTPIVHRDVTSSNVLLNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLSVTEKCDVYSFGVVALEMLMGKHPRELISSLSNPTTQNMLVSDLLDSRLPLPLQKDAPDIDLVVNIALSCLCSKPNLRPSMQQVAEKLSSFKLQMPFHEVSIHQVIGQDIF 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01609 682 SMART LRR_typ_2 128 151 IPR003591 -
Viun10g01609 682 SMART LRR_typ_2 266 298 IPR003591 -
Viun10g01609 682 SMART LRR_typ_2 104 127 IPR003591 -
Viun10g01609 682 SMART LRR_typ_2 152 176 IPR003591 -
Viun10g01609 682 ProSitePatterns Tyrosine protein kinases specific active-site signature. 517 529 IPR008266 GO:0004672|GO:0006468
Viun10g01609 682 Pfam Protein kinase domain 398 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01609 682 SUPERFAMILY Protein kinase-like (PK-like) 379 659 IPR011009 -
Viun10g01609 682 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Viun10g01609 682 ProSiteProfiles Protein kinase domain profile. 393 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01609 682 Gene3D Transferase(Phosphotransferase) domain 1 472 674 - -
Viun10g01609 682 FunFam Nuclear pore complex protein NUP107 12 170 - -
Viun10g01609 682 SUPERFAMILY L domain-like 26 280 - -
Viun10g01609 682 FunFam MDIS1-interacting receptor like kinase 2 472 665 - -
Viun10g01609 682 Pfam Leucine rich repeat 81 141 IPR001611 GO:0005515
Viun10g01609 682 Gene3D Ribonuclease Inhibitor 177 305 IPR032675 -
Viun10g01609 682 Gene3D Phosphorylase Kinase; domain 1 359 471 - -
Viun10g01609 682 PANTHER LEUCINE RICH REPEAT KINASE 2 126 667 - -
Viun10g01609 682 FunFam Leucine-rich repeat receptor protein kinase MSP1 356 471 - -
Viun10g01609 682 Gene3D Ribonuclease Inhibitor 14 176 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01609 Viun-Chr10 31099004 31101814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01609 79 565 Receptor kinase-like Gene Family AT4G08850 39.922 2.87e-109 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun10g01609 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01609 - - vun:114165531 998.038