Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01608 ATGAATGAATCAATTATGAGAAAGTGTGTTTGCAGTTTGGTGCTTATGGCCTTCTGTATGATGCCTGAGCTAGCATCTGTGTTTGGTGCCACCATCTCTCCTTCTTCCATCAATCAGGAACGACAGGCTTTGCTCAACACCGGTTGGTGGAATGATTACCGTAATATCTCTGACCATTGTGATTGGGAGGGTATCTCTTGCAATGAAGCTGGAACTGTTACTGCTATTGAAAGTTGGCACATGAAGACTCCTTCATCAAAAGAATTGCTTTGGATAGATAAGTTGAACTTCACTGCCTTCCCCAATTTAGTCTCTCTGTATCTAACTGGAATGGGTCTTAGAGGAACCATCCCCACAGCAATAGGCTCACTTACTAACCTTAGCAATCTCTTCTTGTATAACAATCATCTCCATGGTTCAATACCACCGCAACTTGGCAACTTGACACAATTGCAAGTTTTATCTCTCTATAATAATTCTCTAGTGGGTTCAATCCCATCTACACTGGGTAATTTGAAGAGTTTGTACGGTCTCTATCTTGATTCAAACGATCTTGAAGGTAGCATTCCAACAGAAATCGGGAATTTGACAAAATTAAGTGAATTATCTCTCTTCAATAATTTACTCACAGGTTCAATTCCTCCTAATTTGGGTCAACTAGAAAGCTTGACAAACTTCTTTCTTCAAGCCAACCAAATTATCGGTGTTATACCAGTAGAATTTGGAAATTTGAAAAGTTTACAAACATTATATCTCTCAAATAATTCTCTCAGTGGTTCAATCCCTCCTACTTTGGGTCGTTTGGGGAATTTGAAACATCTCTTCCTTGATTCTAACCAAATAGAAGGTCACATTCCAGAAGAATTAGGAAATTTGTCCAAATTGGAAGTTTTGCAACTTTCTCATAATAAGATTTCAGGAATATTACCTCCAAAACTTTTGCAAATGGACAAAATGTCCTCTTTATATCTCTCGTCAAATCAGTTATGTGGTTCAATACCATTAAAAACCATGAAATGTCCCTATCATACAGGAGTTGATTTGAGCCATAACTTATTTAATGGGACAATAACCTCTGAAATTGGTTGTATAAATGACCTCAGTCTGAGTCACAATTTTCTTGTTGGTGAGATTCCATTTCTTTTTAGAAGAAGCTTCATACTTAGTCGATTGGATCTTAGTTATAATAATTTTTCGGGCAAAATACACAAGGAACTTGCTAGTCTATCATACATAAACCTTGCATACAATTCCTTTGACTTCTCACAAGACCTTGACTCAAAATCAAACCTACCAGATTACTGCTATTTCCAGGAAGACTCATTAATCAATGATCACCACATGCCCAATTTCACATACTGCCACTTGCTCCACCAAACAAATCCTCAAACTAGGAAAAGTAAGCCTATGATCATGTTAATTGTTCTTCCTATCATTTTCTTCATTCTTTTATTACTCCTTTCAATATTATATTTCTCAAGATGTAAGCCTAAGAAAAAGTGTGAAGGAATAGAAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACCGAAGACTTTGACCTCAAGTACTGTATCGGGACAGGCGCATATGGCAGTGTTTATAGAGCACAACTACCCAGTGGAAATATTGTTGCATTAAAAAAGCTCCACCGTGTGGAATCTCAAAATCCATCATTTGACAAAAGTTTTAGGAATGAGGTGAAGATGTTAACAGAAATCCGTCATAAAAATATCGTAAAGCTTCATGGCTTTTGCCTCCACAACCGGTGCATGTTTCTGGTATATCAATACATGGAAAGAGGTAGTCTATTTTATATTTTGAATAATGAGGTGGAAGCTAAGGAGCTGAATTGGAGTAAGAGGGTAAATGTCATTAAAGGGATGGCACAAGCTTTATCCTACATGCATCATGATTGCAGCCCACCAATTGTTCATCGAGATGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGGACTTATGGCTACATTGCCCCAGAGCTTGCTTATACATTAAGAGTGACAGAAAAATGTGATGTTTTTAGTTTTGGGGTGGTGACTATGGAAACATTAATGGGAAAACATCCTAGAGAGCTAATATCAGCTTCATCAAACCCAACTACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTTCCTCTTCCTCTTCGGAAAGATGCTCAAGATATATATCTTGTGATAAATGTAGCATTATCATGTTTGTGCTTCAAACCAAACTTGAGGCCATCAATGCAGCAAGTGACTGAGAAACTCTCTAGTTTCAAATTCCCATTAAATTTGCCTTTCCATGAAATTTTCATCCATCAAGTGATGAGTCAAGACATATTTCATCTTTCATCCAATTTTCAAGAATGA 2499 0.3705 MNESIMRKCVCSLVLMAFCMMPELASVFGATISPSSINQERQALLNTGWWNDYRNISDHCDWEGISCNEAGTVTAIESWHMKTPSSKELLWIDKLNFTAFPNLVSLYLTGMGLRGTIPTAIGSLTNLSNLFLYNNHLHGSIPPQLGNLTQLQVLSLYNNSLVGSIPSTLGNLKSLYGLYLDSNDLEGSIPTEIGNLTKLSELSLFNNLLTGSIPPNLGQLESLTNFFLQANQIIGVIPVEFGNLKSLQTLYLSNNSLSGSIPPTLGRLGNLKHLFLDSNQIEGHIPEELGNLSKLEVLQLSHNKISGILPPKLLQMDKMSSLYLSSNQLCGSIPLKTMKCPYHTGVDLSHNLFNGTITSEIGCINDLSLSHNFLVGEIPFLFRRSFILSRLDLSYNNFSGKIHKELASLSYINLAYNSFDFSQDLDSKSNLPDYCYFQEDSLINDHHMPNFTYCHLLHQTNPQTRKSKPMIMLIVLPIIFFILLLLLSILYFSRCKPKKKCEGIETKNGDLFSIWNYDGKIAFEDIIEATEDFDLKYCIGTGAYGSVYRAQLPSGNIVALKKLHRVESQNPSFDKSFRNEVKMLTEIRHKNIVKLHGFCLHNRCMFLVYQYMERGSLFYILNNEVEAKELNWSKRVNVIKGMAQALSYMHHDCSPPIVHRDVTSSNVLLNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLRVTEKCDVFSFGVVTMETLMGKHPRELISASSNPTTQNMLVKDLLDSRLPLPLRKDAQDIYLVINVALSCLCFKPNLRPSMQQVTEKLSSFKFPLNLPFHEIFIHQVMSQDIFHLSSNFQE 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01608 832 FunFam Nuclear pore complex protein NUP107 34 185 - -
Viun10g01608 832 ProSiteProfiles Protein kinase domain profile. 533 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01608 832 Gene3D Phosphorylase Kinase; domain 1 498 611 - -
Viun10g01608 832 SUPERFAMILY L domain-like 49 356 - -
Viun10g01608 832 Gene3D Ribonuclease Inhibitor 177 430 IPR032675 -
Viun10g01608 832 Gene3D Transferase(Phosphotransferase) domain 1 612 806 - -
Viun10g01608 832 Pfam Leucine rich repeat 290 329 IPR001611 GO:0005515
Viun10g01608 832 Pfam Leucine rich repeat 222 281 IPR001611 GO:0005515
Viun10g01608 832 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 246 427 - -
Viun10g01608 832 SUPERFAMILY Protein kinase-like (PK-like) 519 799 IPR011009 -
Viun10g01608 832 ProSiteProfiles Leucine-rich repeat profile. 294 315 IPR001611 GO:0005515
Viun10g01608 832 FunFam Leucine-rich repeat receptor protein kinase MSP1 496 611 - -
Viun10g01608 832 SMART LRR_typ_2 124 147 IPR003591 -
Viun10g01608 832 SMART LRR_typ_2 148 172 IPR003591 -
Viun10g01608 832 SMART LRR_typ_2 244 267 IPR003591 -
Viun10g01608 832 SMART LRR_typ_2 268 291 IPR003591 -
Viun10g01608 832 SMART LRR_typ_2 292 316 IPR003591 -
Viun10g01608 832 SMART LRR_typ_2 196 220 IPR003591 -
Viun10g01608 832 Gene3D Ribonuclease Inhibitor 34 174 IPR032675 -
Viun10g01608 832 ProSitePatterns Tyrosine protein kinases specific active-site signature. 657 669 IPR008266 GO:0004672|GO:0006468
Viun10g01608 832 PANTHER LEUCINE RICH REPEAT KINASE 2 102 807 - -
Viun10g01608 832 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524
Viun10g01608 832 SUPERFAMILY L domain-like 346 423 - -
Viun10g01608 832 FunFam MDIS1-interacting receptor like kinase 2 612 804 - -
Viun10g01608 832 Pfam Protein kinase domain 538 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01608 Viun-Chr10 31089897 31092987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01608 90 705 Receptor kinase-like Gene Family AT4G08850 38.665 4.36e-131 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun10g01608 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01608 - - vun:114166569 1640.94