Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01606 TATCGTCTAACTGCAGGTTCAATACCACCCCAACTTGGTAACTTGACACAATTGCAGACACTATCTCTTTATAATAATTTTCTAACAGGTTCAATCCCATCTACATTTGGTCATTTGAAGAATTTGAACACTCTTTATCTTGATTCAAACAAACTTGAAGGTTCAATACCACCCCAACTTGGAAACTTGACACAATTGCAAGAGTTATATCTCTCTAATAATTCTTTAGTGGGTTCAATCCCATCTACACTGGGTAATTTGAAGAGTTTGTACGGTCTCTATCTTGATTCAAACGATCTTGAAGGTAGCATTCCAACAGAATTCGGGAATTTGACAAAATTACAAGAATTATCTCTCTTCAATAATTTACTCACAGGTTCAATCCCTCCAAATTTGGGTCAATTAGAAAGCTTGGCATACTTCTTTTTTCAATCCAACCAAATTACTGGTCCAATACCAGTAGAATTTGGAAATTTAAAAAGTTTAGAAAGATTATATCTCTCAAATAATTCTCTCAATGGTTCAATCCCTCCTACTTTGGGTCGTTTGGGGAATTTGAGACATCTCTTCCTTGATTCTAACCAAATAGAAGGTCACATTCCAGAGGAATTAGGAAATTTGTCCAAATTGGAAGTTTTGCAACTTTCTCATAACAAGATTTCAGGAATATTACCTCCAAAACTTTTGCAAATGGACAAAATGTTCTCTCTACATCTCTCGTCAAATAAGTTATGTGGTCGGATCCCTTTAGAAACCATGAGATGTCCCTGTGCTACAATAGTTGATTTGAGCCATAACTTATTTAATGGAAGCATAACCTCTCAATTTGGTTGTGTAAATGACCTTAATCTTAGTCATAATTTTCTTGTTGGTGAGATTCCATTTTGGAGCTTTGAACCTAGTCGATTAGATCTCAGTTATAATAATCTCTCAGGTAAAGTACATAAGGAACTTGCTAGTCTATCATACATAAACCTCTCATACAATTCCTTTGATTTCTCACAAAATCTTGACTCAGTATCAGAGGTACCAAACTACTATTTTTTTCATGAAGATTCATTAATTAATGATAACCGCATGCCCAATTTCACGTACTGCCACTTGCTCAACCAAACAAATCCTCAAACTAGGAAAAGTAAGCCCGTGATCATGTTAATTGTTCTTCCTATCATTTTCTTCATTCTTTTATTACTCCTTTCAATATTATATTTCTCAAGATGTAAGCCTAAGAAAAAGTGTGAAGGAATAGAAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAGGATATCATTCAAGCAACCCAAGACTTTGACCTCAAGTACTGTATTGGGACAGGTGGATATGGCAGTGTCTATAGAGCACAATTGCCTAGTGGTAATGTTGTGGCATTAAAAAAACTCCACCGAATGGAATCTCAAAATCCATCTTTCGACAGAAGTTTTCGCAATGAGGTGAAGATGTTAACAGAAATCCGTCATAAAAATATCGTAAAGCTTCATGGCTTTTGCCTCCACAACCGGTGCATGTTTCTGGTATATCAATACATGGAAAGAGGTAGTCTATTTTATATTTTGAATAATGAGGTGGAAGCTAAGGAGCTGAATTGGAGTAAGAGAGTAAATGTCATTAAAGGGATGGCACAAGCTTTATCCTACATGCATCATGATTGTACCACACCAATTGTTCATCGAGATGTAACAAGTAGTAATGTTCTATCAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGGACTTATGGCTACATTGCCCCAGAGCTTGCTTATACATTAAGAGTGACAGAAAAATGTGATGTTTTTAGTTTTGGGGTGGTGACTATGGAAACATTAATGGGAAAACATCCTAGAGAGCTAATATCAACTTCATCAAACCCAACTACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTTCCTCTTCCTCTTCAGAAAGATGCTCAAGATATAAATCTTGTGATAAATGTAGCATTATCATGTCTGTGCTTGAAACCAAACTTGAGGCCATCAATGCAGCAAGTGACTGAGAAACTCTCTAGTTTCAAATTCCCAATAAATTTGCCTTTCCATGAAATTTTCATCCATCAAGTGATGAGTCAAGACATATTTCATCTTTCATCCAATTTTCAAGAATGA 2235 0.3579 YRLTAGSIPPQLGNLTQLQTLSLYNNFLTGSIPSTFGHLKNLNTLYLDSNKLEGSIPPQLGNLTQLQELYLSNNSLVGSIPSTLGNLKSLYGLYLDSNDLEGSIPTEFGNLTKLQELSLFNNLLTGSIPPNLGQLESLAYFFFQSNQITGPIPVEFGNLKSLERLYLSNNSLNGSIPPTLGRLGNLRHLFLDSNQIEGHIPEELGNLSKLEVLQLSHNKISGILPPKLLQMDKMFSLHLSSNKLCGRIPLETMRCPCATIVDLSHNLFNGSITSQFGCVNDLNLSHNFLVGEIPFWSFEPSRLDLSYNNLSGKVHKELASLSYINLSYNSFDFSQNLDSVSEVPNYYFFHEDSLINDNRMPNFTYCHLLNQTNPQTRKSKPVIMLIVLPIIFFILLLLLSILYFSRCKPKKKCEGIETKNGDLFSIWNYDGKIAFEDIIQATQDFDLKYCIGTGGYGSVYRAQLPSGNVVALKKLHRMESQNPSFDRSFRNEVKMLTEIRHKNIVKLHGFCLHNRCMFLVYQYMERGSLFYILNNEVEAKELNWSKRVNVIKGMAQALSYMHHDCTTPIVHRDVTSSNVLSNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLRVTEKCDVFSFGVVTMETLMGKHPRELISTSSNPTTQNMLVKDLLDSRLPLPLQKDAQDINLVINVALSCLCLKPNLRPSMQQVTEKLSSFKFPINLPFHEIFIHQVMSQDIFHLSSNFQE 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01606 744 Gene3D Ribonuclease Inhibitor 98 345 IPR032675 -
Viun10g01606 744 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 2 258 - -
Viun10g01606 744 Pfam Protein kinase domain 450 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01606 744 FunFam Leucine-rich repeat receptor protein kinase MSP1 408 523 - -
Viun10g01606 744 Gene3D Transferase(Phosphotransferase) domain 1 524 718 - -
Viun10g01606 744 SUPERFAMILY Protein kinase-like (PK-like) 431 711 IPR011009 -
Viun10g01606 744 SUPERFAMILY RNI-like 4 348 - -
Viun10g01606 744 SMART LRR_typ_2 207 231 IPR003591 -
Viun10g01606 744 SMART LRR_typ_2 159 182 IPR003591 -
Viun10g01606 744 SMART LRR_typ_2 63 87 IPR003591 -
Viun10g01606 744 SMART LRR_typ_2 39 62 IPR003591 -
Viun10g01606 744 SMART LRR_typ_2 111 135 IPR003591 -
Viun10g01606 744 SMART LRR_typ_2 15 38 IPR003591 -
Viun10g01606 744 SMART LRR_typ_2 183 206 IPR003591 -
Viun10g01606 744 ProSiteProfiles Protein kinase domain profile. 445 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01606 744 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 119 712 - -
Viun10g01606 744 SMART LRR_sd22_2 207 225 - -
Viun10g01606 744 SMART LRR_sd22_2 111 134 - -
Viun10g01606 744 SMART LRR_sd22_2 159 174 - -
Viun10g01606 744 SMART LRR_sd22_2 135 156 - -
Viun10g01606 744 SMART LRR_sd22_2 63 89 - -
Viun10g01606 744 SMART LRR_sd22_2 15 44 - -
Viun10g01606 744 SMART LRR_sd22_2 183 206 - -
Viun10g01606 744 Pfam Leucine Rich Repeat 161 182 IPR001611 GO:0005515
Viun10g01606 744 ProSitePatterns Protein kinases ATP-binding region signature. 451 473 IPR017441 GO:0005524
Viun10g01606 744 FunFam MDIS1-interacting receptor like kinase 2 524 716 - -
Viun10g01606 744 Gene3D Ribonuclease Inhibitor 2 97 IPR032675 -
Viun10g01606 744 ProSiteProfiles Leucine-rich repeat profile. 209 230 IPR001611 GO:0005515
Viun10g01606 744 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Viun10g01606 744 Pfam Leucine rich repeat 17 76 IPR001611 GO:0005515
Viun10g01606 744 Gene3D Phosphorylase Kinase; domain 1 410 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01606 Viun-Chr10 30995965 30998385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01606 5 617 Receptor kinase-like Gene Family AT4G08850 38.791 4.97e-140 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun10g01606 Pkinase 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01606 - - vun:114165531 1462.97