Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01604 ATGAGAAAGTGTGTTTGCAGTTTGGTGCTTATGGCCTTCTGTATGATGCCTGAGCTAGCATCTGTGTTTGGTGCCACCATCTCTCCTTCTTCCATCAATCAGGAACGACAGGCTTTGCTCAACACCGGTTGGTGGAATGATTACCGTAATATCTCTGACCATTGTGATTGGGAGGGTATCTCTTGCAATGAAGCTGGAACTGTTACTGCTATTGACAGTTGGTACATGAAGACTCCTTCATCACAAGAATTGCTTTGGATAGATAAGTTGAACTTCACTGCCTTCCCCAATTTAGTCTCTCTGTATCTACGTAGAATGGATCTTAGAGGAAGCATCCCCAAAGAAATAGCCACACTTACTAACCTTACCACTCTTGACCTGTCCAACAATCGTCTCCAAGGTTCAATACCACCCCAACTTGCCAACTTGACACAATTGCAAGTTTTATCTCTCTATAATAATTCTCTAGTGGGTTCAATCCCATCTACATTTGGTCATTTGAAGAATTTGTACGTTCTCTATCTTGATTCAAACGATCTTGAAGGTTCAATACCACCGGAACTTGGTAACTTAACACGATTGCAACAGTTATTTCTCTCTAGGAATTCTCTAGCAGGTTTTATCCCATCTACATTGGGTCAATTGATCGATTTGCGATTTCTCTATCTTGATGCAAACAAACTTCAAGGTTCAATACCACTACAACTTGCTAATTCCACACATTTGCTGGAATTAATTCTCTCTAATAATTCGCTAACGGGTTCAGTCCCGTCTACTTTTGGTCAACTCATGAACTTGGAAGCTCTTTATCTGGATTCAAACAAACTTGAAGGTTCAATTCCATATACTTTGGGTCAATTAGAGAACTTGACAGATTTCTTCCTTCAATCTAACCAAATAACTGGTCCTATACCAGTAGAATTTGGAAATTTAAAAGGTTTACAAAGATTACATCTCTCAAATAATTTCCTTAACGGTTCAATTCCTTCTACTTTAGGCCTGTTGGAGAATTTGGTATACCTCTACCTTGATTCTAATCAAATACAAGGCCACATACCCGAAGAATTAGGAAATCTGGCGAAATTAAATGTTTTGCAACTTTCTCATAATAAGATTTCAGGTTTCATACCTCCAAGTCTTTTGCAGATAAACACAATGTACTTTTTATATCTCTCATCAAATCAGTTATGTGGTTCAATACCATTAGAAACCATGATATGTCCCTATGCTTCAATAGTTGATTTAAGCAATAACTTGTTTAATGGAAGCATAACATCTCAAATTGTTTGTGTCAATGACCTTAATCTTAGTCACAATTTTCTTGAAGGCGAGATTCCATATATTTTTATACGGGGATCCATACCTAGTCGATTGGATCTTAGTTATAATAATCTCTCAGGAAAAGTATATAAGGAACTTGCTAGTCTATCATATATAAACCTTTCGTACAACTCCTTTGACTTCTTGCACGACCTTAACTCAAAATCAAAGGTACCAGACTATTGTTCTTTTCGAGAAGACTCGCTAATTGATGATCATCACATGCCCAATTTTTCATACTGCCACTTGGTTTACAAAACTGATCTTCAAACCAGAAAAAGTAAGCCAAGTATTATGTTGGTTGTTATTCCCATCATTTTCTTCGGCCTTTTAGTACTACTTTTAATATTATATTTCCTAAGATCTATTTCTAAGAAAAATTGTGAAGGAATATCAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAAGATATCATTGAAGCAACCGAAGACTTTGACCTCAAGTACTGTATTGGGACAGGTGGGTATGGCAGTGTCTATAGAGTAGAACTACCCAGCGACAATATTGTCGCATTAAAAAAGCTCCATCGATTGGAATCCCAAAATCCATCTTTCAATAGAAGTTTTCACAATGAGGTGAAGATGTTAACGGAAATTCGTCATAGAAACATCGTAAAGCTTCATGGATTTTGCCTCCACAATCAATGCATGTTTCTTATCTATCAATACATGGAAAGAGGTAGTTTGTTTTATATTTTGAATAATGATGTGGAAGCTCAGGAGTTGAATTGGAGTAAAAGGGTAAATGTCATTAAAGGGATAGCACACGCTTTAACCTACATGCATCATGATTGTACCACACCAATTGTTCATCGACATGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGGACTTATGGCTACATTGCCCCAGAGCTTGCTTATACATTAAGAGTGACAGAAAAATGTGATGTTTATAGTTTTGGGGTGGTGACTTTGGAAACATTAATGGGAAAACATCCAGGAGAGCTAATCTCATCTTTATCAAAATCAACCACTCAAAATATGTTATTGAAAGATCTATTGGATTCACGTCTTCCTCTTCCTGTTCGAAAAGATGCTCAAGATATATATCTTGTGGTAAATGTAGCATTATCATGTTTGTGCTCCAAACCAAACTTGAGACCATCAATGCAACAAGTGGTTGAGAAATTCTCTAGTTTCAAACTGCCATTATATTTGCCCATCCATGAAGTTTTTATCGATCAAGTGATGAGCCAAGACATAGTTCATCTTTCATCCAAGTTTTAA 2694 0.3667 MRKCVCSLVLMAFCMMPELASVFGATISPSSINQERQALLNTGWWNDYRNISDHCDWEGISCNEAGTVTAIDSWYMKTPSSQELLWIDKLNFTAFPNLVSLYLRRMDLRGSIPKEIATLTNLTTLDLSNNRLQGSIPPQLANLTQLQVLSLYNNSLVGSIPSTFGHLKNLYVLYLDSNDLEGSIPPELGNLTRLQQLFLSRNSLAGFIPSTLGQLIDLRFLYLDANKLQGSIPLQLANSTHLLELILSNNSLTGSVPSTFGQLMNLEALYLDSNKLEGSIPYTLGQLENLTDFFLQSNQITGPIPVEFGNLKGLQRLHLSNNFLNGSIPSTLGLLENLVYLYLDSNQIQGHIPEELGNLAKLNVLQLSHNKISGFIPPSLLQINTMYFLYLSSNQLCGSIPLETMICPYASIVDLSNNLFNGSITSQIVCVNDLNLSHNFLEGEIPYIFIRGSIPSRLDLSYNNLSGKVYKELASLSYINLSYNSFDFLHDLNSKSKVPDYCSFREDSLIDDHHMPNFSYCHLVYKTDLQTRKSKPSIMLVVIPIIFFGLLVLLLILYFLRSISKKNCEGISTKNGDLFSIWNYDGKIAFEDIIEATEDFDLKYCIGTGGYGSVYRVELPSDNIVALKKLHRLESQNPSFNRSFHNEVKMLTEIRHRNIVKLHGFCLHNQCMFLIYQYMERGSLFYILNNDVEAQELNWSKRVNVIKGIAHALTYMHHDCTTPIVHRHVTSSNVLLNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLRVTEKCDVYSFGVVTLETLMGKHPGELISSLSKSTTQNMLLKDLLDSRLPLPVRKDAQDIYLVVNVALSCLCSKPNLRPSMQQVVEKFSSFKLPLYLPIHEVFIDQVMSQDIVHLSSKF 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01604 897 SUPERFAMILY Protein kinase-like (PK-like) 586 864 IPR011009 -
Viun10g01604 897 ProSiteProfiles Protein kinase domain profile. 600 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01604 897 ProSiteProfiles Leucine-rich repeat profile. 361 382 IPR001611 GO:0005515
Viun10g01604 897 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 329 424 - -
Viun10g01604 897 FunFam Leucine-rich repeat receptor protein kinase MSP1 563 678 - -
Viun10g01604 897 Pfam Leucine rich repeat 241 300 IPR001611 GO:0005515
Viun10g01604 897 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Viun10g01604 897 Gene3D Ribonuclease Inhibitor 239 498 IPR032675 -
Viun10g01604 897 Pfam Protein kinase domain 605 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01604 897 Gene3D Phosphorylase Kinase; domain 1 564 678 - -
Viun10g01604 897 SUPERFAMILY L domain-like 48 425 - -
Viun10g01604 897 Gene3D Transferase(Phosphotransferase) domain 1 679 872 - -
Viun10g01604 897 SMART LRR_sd22_2 287 308 - -
Viun10g01604 897 SMART LRR_sd22_2 119 145 - -
Viun10g01604 897 SMART LRR_sd22_2 335 361 - -
Viun10g01604 897 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 89 322 - -
Viun10g01604 897 ProSiteProfiles Leucine-rich repeat profile. 121 144 IPR001611 GO:0005515
Viun10g01604 897 FunFam MDIS1-interacting receptor like kinase 2 679 871 - -
Viun10g01604 897 Gene3D Ribonuclease Inhibitor 168 238 IPR032675 -
Viun10g01604 897 PRINTS Leucine-rich repeat signature 122 135 - -
Viun10g01604 897 PRINTS Leucine-rich repeat signature 359 372 - -
Viun10g01604 897 SUPERFAMILY L domain-like 433 491 - -
Viun10g01604 897 Gene3D Ribonuclease Inhibitor 29 167 IPR032675 -
Viun10g01604 897 PANTHER LEUCINE RICH REPEAT KINASE 2 213 870 - -
Viun10g01604 897 SMART LRR_typ_2 240 262 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 335 358 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 143 166 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 263 287 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 473 495 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 167 190 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 119 142 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 191 215 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 311 334 IPR003591 -
Viun10g01604 897 SMART LRR_typ_2 359 383 IPR003591 -
Viun10g01604 897 ProSitePatterns Protein kinases ATP-binding region signature. 606 628 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01604 Viun-Chr10 30972326 30975848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01604 95 772 Receptor kinase-like Gene Family AT4G08850 40.083 6.67e-159 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun10g01604 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01604 - - vun:114166569 1273.46