Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01603 ATGAATGAAGGAATTATGGGAAAGTGTGTTTGCAGTTTGGTGCTTATGGCCTTCTGTATGATGCCTGAGCTAGCATCTGTGTTTGGTGCCACCATCCCTTCTTCTTCCATCAATCAGGAACGAGAGGCTTTGCTCAACAGCGGTTTGTGGAATGATTACCGTAATATCTCTGACCATTGTGATTGGAAGGGTATCTCTTGCAATGAAGCTGGAAGTGTTACTGCTATTGACAGTTGGTACATGAAGACTCCTTCATCACAAGAATTGCTTTGGATAGATAAGTTGAACTTCACTGCCTTCCCCAATTTAGAGCATCTGCGTCTAACTGGAATGGGTCTGAAAGGAAGCATCCCCACACAAATAACCACACTTACTAACCTTAGCTATCTCGTCTTGTCTAACAATCATCTCCATGGTTCAATACCACCGCAACTTGGCAACTTGACACAATTGCAAGTTTTATCTCTCTCTAGGAATTCTCTAGCAGGTTTTATCCCATCTACATTGGGTCAATTGATCAATTTGCAATATCTTTCTCTTGAATCAAACAAACTTCAAGGTTCAATACCACTACAACTTGCTAATTCCACACATTTGCTGGAATTAATTCTCTCTAATAATTCGCTAACGGGTTCAGTCCCGTCTACTTTTGGTCAACTCAAGAACTTGGAAGCTCTTTATCTGGATTCAAACAAACTTGAAGGTTCAATTCCATATACTTTGGGTCAATTAGAGAACTTGAAGCTTTTCTTCCTTCAATATAACCAAATTACTGGTCCTATACCACAAGAATTTGGAAATTTAAAAGTTTTACAAAGTTTACATCTCTCAAATAATTCCCTCAACGGTTCAATTCCTTCTACTTTAGGTGGGTTGGTGAGTTTGGTATACCTCTACCTTGATTCTAATCAAATACAAGGCCACATACCCGAAGAATTAGGATATCTAACCAAATTACAAGTTTTGCAACTTTCTCATAATAAGATTTCAGGCTTATTACCTCCAAGACTTTTGCAAATGGAAAAAATGTCCTCTTTATATCTCTCGTCAAATCAGTTATGTGGTTCAATCTCATTAAAAACCATGAAATGTCCGTATGATACAATTGATTTGAGCCATAACTTATTTAATGGAAGCATAACCTCTCAAATTGGTTGCATAACTGACCTTAGTCTGAGTCATAATTTTCTTGTTGGGGAGATTCCATTTCTTTTTAGAAGAAGCTTCATACTTAGTCGATTGGATCTTAGTTATAATAATTTTTCAGGCAAAGTACACAAGGAACTTGCTAGTCTATCATACATAAATCTTGCATACAATTCCTTTGACTTCTCACAAGACCTTGACTCAAAATCAAAGGTACCAGACTACTGTTATTTTCAGGAAGACTCATTAATCAATGATCATCACATGCCGAATTTTTCATACTGCCACTTGGTTTACAAAACTGATCTTCAAACCAGAAAAAGTAAGCTAAGTATTATGTTGGTTGTTATTCCCATCATTTTCTTCAGCCTTTTAGTACTACTTTTAATATTATATTTCCTAAGATCTATTCCTAAGAAAAAATGTGAAGAAATATCAACAAAGAATGGAAACTTTTTTTCTGTATGGAACTATGATGGAAAAATTGCATTTAAAGATATCATTGAAGCAACTGAAGACTTTGACCTCAAGTATTGTATTGGGACAGGCGGATATGGCAGTGTCTATAGAGCACAATTGCCTAGTGGAAACGTTGTAGCATTAAAAAAACTCCATCGAATCGAATCTCAAAATCCATCTTTCGACAGAAGTTTTCGCAATGAGGTGAAGATGTTAACAGAAATTCGTCATAGAAACATTGTAAAGCTTCATGGATTTTGCCTCCACAATCAATGCATGTTTCTTATCTATCAGTACATGGAAAGAGGTAGTTTATTTTATATTTTGAACAATGATGTGGAAGCTAAGGAGTTGAATTGGAGTAAGAGGGTAAATGTGATTAAAGGGATGGCACAAGCTTTATCCTACATGCATCATGATTGTACCACACCAATTGTTCATCGAGACGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCTGATTCTTCAAATCAAACCTTGGTAGTCGGGACTTATGGCTACATTGCCCCAGAGCTTGCTTATACATTAAGAGTGACAGAAAAATGTGATGTTTATAGTTTTGGGGTGGTGACTTTGGAAACATTAATGGGAAAACATCCTAGAGAGATAATATCAACTTCATCAAATCCAACTACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTTCCTCTTCCTATTCAGAAAGATGCTGAAGATATAAGTCTTGTGATAAATGTAGCATTATCATGTTTGTGCTCTAAATCAAACTTGAGGCCATCAATGCAACAAGTGACTGAGAAACTCTCTGGTTTCAAATTCCTATTAGATTTGCCTTTCCAGGAAGTTTTTATCCATCAAGTGATGAGCCAAGATATATTTCATCTTTCATCCAATTTTCAAGAATGA 2568 0.3629 MNEGIMGKCVCSLVLMAFCMMPELASVFGATIPSSSINQEREALLNSGLWNDYRNISDHCDWKGISCNEAGSVTAIDSWYMKTPSSQELLWIDKLNFTAFPNLEHLRLTGMGLKGSIPTQITTLTNLSYLVLSNNHLHGSIPPQLGNLTQLQVLSLSRNSLAGFIPSTLGQLINLQYLSLESNKLQGSIPLQLANSTHLLELILSNNSLTGSVPSTFGQLKNLEALYLDSNKLEGSIPYTLGQLENLKLFFLQYNQITGPIPQEFGNLKVLQSLHLSNNSLNGSIPSTLGGLVSLVYLYLDSNQIQGHIPEELGYLTKLQVLQLSHNKISGLLPPRLLQMEKMSSLYLSSNQLCGSISLKTMKCPYDTIDLSHNLFNGSITSQIGCITDLSLSHNFLVGEIPFLFRRSFILSRLDLSYNNFSGKVHKELASLSYINLAYNSFDFSQDLDSKSKVPDYCYFQEDSLINDHHMPNFSYCHLVYKTDLQTRKSKLSIMLVVIPIIFFSLLVLLLILYFLRSIPKKKCEEISTKNGNFFSVWNYDGKIAFKDIIEATEDFDLKYCIGTGGYGSVYRAQLPSGNVVALKKLHRIESQNPSFDRSFRNEVKMLTEIRHRNIVKLHGFCLHNQCMFLIYQYMERGSLFYILNNDVEAKELNWSKRVNVIKGMAQALSYMHHDCTTPIVHRDVTSSNVLLNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLRVTEKCDVYSFGVVTLETLMGKHPREIISTSSNPTTQNMLVKDLLDSRLPLPIQKDAEDISLVINVALSCLCSKSNLRPSMQQVTEKLSGFKFLLDLPFQEVFIHQVMSQDIFHLSSNFQE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01603 855 Gene3D Ribonuclease Inhibitor 194 453 IPR032675 -
Viun10g01603 855 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Viun10g01603 855 SMART LRR_typ_2 316 340 IPR003591 -
Viun10g01603 855 SMART LRR_typ_2 148 171 IPR003591 -
Viun10g01603 855 SMART LRR_typ_2 292 314 IPR003591 -
Viun10g01603 855 SMART LRR_typ_2 268 291 IPR003591 -
Viun10g01603 855 SMART LRR_typ_2 124 147 IPR003591 -
Viun10g01603 855 SMART LRR_typ_2 172 196 IPR003591 -
Viun10g01603 855 SMART LRR_typ_2 220 244 IPR003591 -
Viun10g01603 855 SMART LRR_typ_2 197 219 IPR003591 -
Viun10g01603 855 Gene3D Transferase(Phosphotransferase) domain 1 635 828 - -
Viun10g01603 855 Pfam Protein kinase domain 561 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01603 855 Gene3D Phosphorylase Kinase; domain 1 519 634 - -
Viun10g01603 855 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 231 462 - -
Viun10g01603 855 ProSiteProfiles Protein kinase domain profile. 556 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01603 855 ProSitePatterns Tyrosine protein kinases specific active-site signature. 680 692 IPR008266 GO:0004672|GO:0006468
Viun10g01603 855 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Viun10g01603 855 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Viun10g01603 855 ProSiteProfiles Leucine-rich repeat profile. 318 339 IPR001611 GO:0005515
Viun10g01603 855 FunFam MDIS1-interacting receptor like kinase 2 635 826 - -
Viun10g01603 855 FunFam Leucine-rich repeat receptor protein kinase MSP1 519 634 - -
Viun10g01603 855 FunFam Nuclear pore complex protein NUP107 34 191 - -
Viun10g01603 855 SUPERFAMILY RNI-like 105 442 - -
Viun10g01603 855 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 226 823 - -
Viun10g01603 855 SUPERFAMILY Protein kinase-like (PK-like) 540 822 IPR011009 -
Viun10g01603 855 ProSitePatterns Protein kinases ATP-binding region signature. 562 584 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01603 Viun-Chr10 30956019 30959463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01603 100 728 Receptor kinase-like Gene Family AT4G08850 37.397 2.01e-133 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun10g01603 Pkinase 9.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01603 - - vun:114166569 1361.67