Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01602 ATGAATGAAGGAATTATGGGAAAGTGTGTTTGCAGTTTGGTGCTTATGGCCTTCTGTATGATGCCTGAGCTAGCATCTGTGTTTGGTGCCACCATCCCTTCTTCTTCCATCAATCAGGAACGAGAGGCTTTGCTCAACAGCGGTTTGTGGAATGATTACCGTAATATCTCTGACCATTGTGATTGGAAGGGTATCTCTTGCAATGAAGCTGGAAGTGTTACTGCTATTGACAGTTGGTACATGAAGACTCCTTCATCACAAGAATTGCTTTGGATAGATAAGTTGAACTTCACTGCCTTCCCCAATTTAGAGCATCTGCGTCTAACTGGAATGGGTCTGAAAGGAAGCATCCCCACACAAATAACCACACTTACTAACCTTAGCTATCTCGTCTTGTCTAACAATCATCTCCATGGTTCAATACCACCGCAACTTGGCAACTTGACACAATTGCAAGTTTTATCTCTCTCTAGGAATTCTCTAGCAGGTTTTATCCCATCTACATTGGGTCAATTGATCAATTTGCAATATCTTTCTCTTGAATCAAACAAACTTCAAGGTTCAATACCACCGCAACTTGGTAACTTGACACAATTAAATCTCTTATCTCTCTCTGGGAATTCTCTAGCAGGTTTAATCTCATCTACATTGGGTCAATTGATCAATTTGCGAACTCTCTACCTTGATTCAAACAAACTTCAAGGTTCAATACCACTACAACTTGCTAATTCCACACATTTGCTGGAATTAATTCTCTCTAATAATTCGCTAACGGGTTCAGTCCCGTCTACTTTTGGTCAACTCAAGAACTTGGAAGCTCTTTATCTGGATTCAAACAAACTTGAAGGTTCAATTCCATATACTTTGGGTCAATTAGAGAACTTGAAGCTTTTCTTCCTTCAATATAACCAAATTACTGGTCCTATACCACAAGAATTTGGAAATTTAAAAGTTTTACAAAGTTTACATCTCTCAAATAATTCCCTCAACGGTTCAATTCCTTCTACTTTAGGTGGGTTGGTGAGTTTGGTATACCTCTACCTTGATTCTAATCAAATACAAGGCCACATACCCGAAGAATTAGGATATCTAACCAAATTACAAGTTTTGCAACTTTCTCATAATAAGATTTCAGGCTTATTACCTCCAAGACTTTTGCAAATGGAAAAAATGTCCTCTTTATATCTCTCGTCAAATCAGTTATGTGGTTCAATCTCATTAAAAACCATGAAATGTCCGTATGATACAATTGATTTGAGCCATAACTTATTTAATGGAAGCATAACCTCTCAAATTGGTTGCATAACTGACCTTAGTCTGAGTCATAATTTTCTTGTTGGGGAGATTCCATTTCTTTTTAGAAGAAGCTTCATACTTAGTCGATTGGATCTTAGTTATAATAATTTTTCAGGCAAAGTACACAAGGAACTTGCTAGTCTATCATACATAAATCTTGCATACAATTCCTTTGACTTCTCACAAGACCTTGACTCAAAATCAAAGGTACCAGACTACTGTTATTTTCAGGAAGACTCATTAATCAATGATCATCACATGCCGAATTTTTCATACTGCCACTTGGTTTACAAAACTGATCTTCAAACCAGAAAAAGTAAGCTAAGTATTATGTTGGTTGTTATTCCCATCATTTTCTTCAGCCTTTTAGTACTACTTTTAATATTATATTTCCTAAGATCTATTCCTAAGAAAAAATGTGAAGAAATATCAACAAAGAATGGAAACTTTTTTTCTGTATGGAACTATGATGGAAAAATTGCATTTAAAGATATCATTGAAGCAACTGAAGACTTTGACCTCAAGTATTGTATTGGGACAGGCGGATATGGCAGTGTCTATAGAGCACAATTGCCTAGTGGAAACGTTGTAGCATTAAAAAAACTCCATCGAATCGAATCTCAAAATCCATCTTTCGACAGAAGTTTTCGCAATGAGGTGAAGATGTTAACAGAAATTCGTCATAGAAACATTGTAAAGCTTCATGGATTTTGCCTCCACAATCAATGCATGTTTCTTATCTATCAGTACATGGAAAGAGGTAGTTTATTTTATATTTTGAACAATGATGTGGAAGCTAAGGAGTTGAATTGGAGTAAGAGGGTAAATGTGATTAAAGGGATGGCACAAGCTTTATCCTACATGCATCATGATTGTACCACACCAATTGTTCATCGAGACGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTGTCTCAGACTTTGGCACAGCTAGACTCCTTGATCCTGATTCTTCAAATCAAACCTTGGTAGTCGGGACTTATGGCTACATTGCCCCAGAGCTTGCTTATACATTAAGAGTGACAGAAAAATGTGATGTTTATAGTTTTGGGGTGGTGACTTTGGAAACATTAATGGGAAAACATCCTAGAGAGATAATATCAACTTCATCAAATCCAACTACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTTCCTCTTCCTATTCAGAAAGATGCTGAAGATATAAGTCTTGTGATAAATGTAGCATTATCATGTTTGTGCTCTAAATCAAACTTGAGGCCATCAATGCAACAAGTGACTGAGAAACTCTCTGGTTTCAAATTCCTATTAGATTTGCCTTTCCAGGAAGTTTTTATCCATCAAGTGATGAGCCAAGATATATTTCATCTTTCATCCAATTTTCAAGAATGA 2712 0.3636 MNEGIMGKCVCSLVLMAFCMMPELASVFGATIPSSSINQEREALLNSGLWNDYRNISDHCDWKGISCNEAGSVTAIDSWYMKTPSSQELLWIDKLNFTAFPNLEHLRLTGMGLKGSIPTQITTLTNLSYLVLSNNHLHGSIPPQLGNLTQLQVLSLSRNSLAGFIPSTLGQLINLQYLSLESNKLQGSIPPQLGNLTQLNLLSLSGNSLAGLISSTLGQLINLRTLYLDSNKLQGSIPLQLANSTHLLELILSNNSLTGSVPSTFGQLKNLEALYLDSNKLEGSIPYTLGQLENLKLFFLQYNQITGPIPQEFGNLKVLQSLHLSNNSLNGSIPSTLGGLVSLVYLYLDSNQIQGHIPEELGYLTKLQVLQLSHNKISGLLPPRLLQMEKMSSLYLSSNQLCGSISLKTMKCPYDTIDLSHNLFNGSITSQIGCITDLSLSHNFLVGEIPFLFRRSFILSRLDLSYNNFSGKVHKELASLSYINLAYNSFDFSQDLDSKSKVPDYCYFQEDSLINDHHMPNFSYCHLVYKTDLQTRKSKLSIMLVVIPIIFFSLLVLLLILYFLRSIPKKKCEEISTKNGNFFSVWNYDGKIAFKDIIEATEDFDLKYCIGTGGYGSVYRAQLPSGNVVALKKLHRIESQNPSFDRSFRNEVKMLTEIRHRNIVKLHGFCLHNQCMFLIYQYMERGSLFYILNNDVEAKELNWSKRVNVIKGMAQALSYMHHDCTTPIVHRDVTSSNVLLNSQLEACVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLRVTEKCDVYSFGVVTLETLMGKHPREIISTSSNPTTQNMLVKDLLDSRLPLPIQKDAEDISLVINVALSCLCSKSNLRPSMQQVTEKLSGFKFLLDLPFQEVFIHQVMSQDIFHLSSNFQE 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01602 903 Gene3D Transferase(Phosphotransferase) domain 1 683 876 - -
Viun10g01602 903 FunFam Leucine-rich repeat receptor-like protein kinase TDR 222 491 - -
Viun10g01602 903 SMART LRR_typ_2 148 171 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 196 219 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 316 339 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 364 388 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 220 244 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 172 195 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 340 362 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 268 292 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 245 267 IPR003591 -
Viun10g01602 903 SMART LRR_typ_2 124 147 IPR003591 -
Viun10g01602 903 FunFam Leucine-rich repeat receptor protein kinase MSP1 567 682 - -
Viun10g01602 903 SUPERFAMILY L domain-like 416 493 - -
Viun10g01602 903 Gene3D Ribonuclease Inhibitor 243 510 IPR032675 -
Viun10g01602 903 PANTHER LEUCINE RICH REPEAT KINASE 2 342 872 - -
Viun10g01602 903 FunFam Nuclear pore complex protein NUP107 34 187 - -
Viun10g01602 903 ProSiteProfiles Protein kinase domain profile. 604 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01602 903 SUPERFAMILY L domain-like 51 408 - -
Viun10g01602 903 Gene3D Phosphorylase Kinase; domain 1 567 682 - -
Viun10g01602 903 ProSitePatterns Tyrosine protein kinases specific active-site signature. 728 740 IPR008266 GO:0004672|GO:0006468
Viun10g01602 903 ProSiteProfiles Leucine-rich repeat profile. 366 387 IPR001611 GO:0005515
Viun10g01602 903 SUPERFAMILY Protein kinase-like (PK-like) 588 870 IPR011009 -
Viun10g01602 903 Pfam Protein kinase domain 609 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01602 903 Gene3D Ribonuclease Inhibitor 34 173 IPR032675 -
Viun10g01602 903 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Viun10g01602 903 Pfam Leucine rich repeat 222 281 IPR001611 GO:0005515
Viun10g01602 903 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Viun10g01602 903 FunFam MDIS1-interacting receptor like kinase 2 683 874 - -
Viun10g01602 903 ProSitePatterns Protein kinases ATP-binding region signature. 610 632 IPR017441 GO:0005524
Viun10g01602 903 Gene3D Ribonuclease Inhibitor 174 242 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01602 Viun-Chr10 30956019 30959463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01602 100 776 Receptor kinase-like Gene Family AT4G08850 39.202 3.98e-149 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun10g01602 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01602 - - vun:114166569 1345.1