Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01560 ATGCAACTCATCACAATACTATTCATTGCTCTCTCTAGCAGAAAAAAAAAAAACATGGCTACCTATGCCACCACCACCACCTTGTTCCTCCTCCTTGGCATGGCCACCACCACCCTCTGCCTCCAAGAAAAGGGTGTCCTCAAAATGGCTCAGAATCATGTCTCCGAAGCCAAAAACTGGGTTGCAAACGCTTTGACATTGCATGGCTTTGAAAGCCTAAGCCTAAGCCTTTCTCACCAAACAAGTGTTGTAGCCCTCAGAGACTGTTCCAAGCTCTATGAGGAGAGTGAGTGTAGACTCTCTCACATGATGTCTCAGAACAGCACTTACACCAGAGAAGATGCACTCACATGGATAAGTGCTGTGATGACAAATCACAGAACCTGTTTGGATGGTCTGCAAGAAAAAGGGTATGTTGAAGCTCAGATTCTGGAGAGAAACTTGACCATGTCGCTTAAGCAAGCTCTTATGTTGTATTCAAGGAATAGAGTCATAGCCAAAGGACCACCACTTGAAGGAACAATATCCAAAGGTTCTGGTATTTTAGAATCATGGAACGAAGCAACCTATCAGCCACATTTCACAGTAGCACAAGATGGTTCAGGAACACACAGAACAATCCAAGCAGCAGTGAATGCACTTGCTGCAATGGGAAACAATCGTCCTGCAAGAGCAATCATATATGTAAAATCCGGGATCTATAACGAGAAGGTGAACATTGGACAGAATCTGCATAACGTGATGTTCGTAGGAGATGGCATAGACAAAACTGTCGTCACCGGCAACAAAAACGTGGTTCAAGGATCCACCACCCTCGGCTCAGCCACATTCGATGTATCAGGAGATGGATTTTGGGCGAGAGACATGACATTTGAGAACAGCGCAGGACCAGAAAAGCACCAAGCAGTGGCACTGAAGGTTAGTTCAGACTTATCAGTGTTCTACAGGTGCAGCTTCAAGGGCTACCAAGACACTCTCTACGTGCTTTCAAACCGCCAATTCTACCGTGACTGTCAGATCTACGGCACCGTGGATTTCATATTCGGTGATGCTGCGGTGGTGCTGCAGAACTGTGACATCTTAGTGAGGAAACCGATGAGCCAGCAATCGAACTTCATCACAGCGCAAGGAAGAGATGATCCTAACAAGAACACGGGGATTGTGGTCCAAAGTTGCAGGGTTAGAGCAGCATCAGATTTTGCGAGCGTGACGAGTTCGCACAAGACGTTCCTTGGAAGGCCGTGGAGGAAGTACTCGAGGACTGTGTTCATGAGGAGTGAGTTGGATGGGATGATTGCGGCAAAAGGGTGGGGTGAATGGAGTGGAAGTTTTGCACTTTCGACGTTGTTCTATGGAGAGTATATGAACACGGGAAGTGGTGCTTCTACGGTGAATAGGGTGAGTTGGCCTGGTTTTCATGTGCTGAGGAGTGGTGGTGAGGCATCACCGTTCACGGTGAGAGAGTTTGTGCAAGGAGAAAGGTGGATTCCTGCAACAGGGGTGCCATACTCTTCTGGAATATGA 1524 0.4724 MQLITILFIALSSRKKKNMATYATTTTLFLLLGMATTTLCLQEKGVLKMAQNHVSEAKNWVANALTLHGFESLSLSLSHQTSVVALRDCSKLYEESECRLSHMMSQNSTYTREDALTWISAVMTNHRTCLDGLQEKGYVEAQILERNLTMSLKQALMLYSRNRVIAKGPPLEGTISKGSGILESWNEATYQPHFTVAQDGSGTHRTIQAAVNALAAMGNNRPARAIIYVKSGIYNEKVNIGQNLHNVMFVGDGIDKTVVTGNKNVVQGSTTLGSATFDVSGDGFWARDMTFENSAGPEKHQAVALKVSSDLSVFYRCSFKGYQDTLYVLSNRQFYRDCQIYGTVDFIFGDAAVVLQNCDILVRKPMSQQSNFITAQGRDDPNKNTGIVVQSCRVRAASDFASVTSSHKTFLGRPWRKYSRTVFMRSELDGMIAAKGWGEWSGSFALSTLFYGEYMNTGSGASTVNRVSWPGFHVLRSGGEASPFTVREFVQGERWIPATGVPYSSGI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01560 507 Gene3D - 187 507 IPR012334 -
Viun10g01560 507 Pfam Pectinesterase 194 493 IPR000070 GO:0030599|GO:0042545
Viun10g01560 507 ProSitePatterns Pectinesterase signature 2. 340 349 IPR033131 -
Viun10g01560 507 PANTHER PECTINESTERASE 53 497 - -
Viun10g01560 507 FunFam Pectinesterase 187 507 - -
Viun10g01560 507 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 160 IPR035513 -
Viun10g01560 507 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 150 IPR035513 -
Viun10g01560 507 SMART PMEI_2 42 158 IPR006501 GO:0004857
Viun10g01560 507 Pfam Plant invertase/pectin methylesterase inhibitor 47 142 IPR006501 GO:0004857
Viun10g01560 507 SUPERFAMILY Pectin lyase-like 190 506 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01560 Viun-Chr10 30766081 30769481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01560 19 507 Carbohydrate Esterase AT3G60730 51.321 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01560 K01051 - gmx:100792852 768.844