Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01559 ATGTCAACTTTTAACTTGTTCATCACACTCTTAGTTTTTTTCTTACTTTCTTCTTCTTTCGTTTCTAGTTATTCTGGGAATGATGTTCAACTTTGGTGCAACCAAACCCCAAATCCTCAACCATGTGAGTATTTCTTGACCAATAGCCCCACTCAACAAAACAAAAAAATCAACCAAAAATCTGATTTTCTCCAACTTTCACTTCAACTTGTTCAAGAACGGGCACTTATAGCCCATGCAAACACTCTTTCACTGGCTTCAAAATGCCGTAATCCACGTGAAACAGCTGCATGGACAGATTGTGTTGAGCTTTATGAACAAACCATCCTTAAACTCAACAAAACCTTAGACCCTAACACCAAGAGCTCCCAAGTTGATACTCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCTGGGTTCTACGAGCTTGGGGTTCAAGACTATGTTCTCTCTTTCATGTCCAACAATGTTACCCAGTTGTTGAGCAACACTTTGGCTCTGAACAAGGTTGAATATCAAGAACCAAGTTACAGAGACTGGTTTCCAACATGGGTGAAGCCAGGTGATAGGAAATTGTTGCAGGCTTCTTCTCCAGCTTCTAAGGCCAACGTAGTTGTGGCAAAAGATGGTTCTGGAAAGTACACAACAGTGAGTGCAGCCATAAATGCTGCACCAGTGAGTAGCGGTGGAAGGTATGTGATATATGTGAAGAGTGGAGTGTACAATGAACAGGTTGAGATAAAAGCAAAGAATATAATGTTGGTGGGAGATGGTATCGGAAAGACCATAATCACAGGTAGCAAAAGTGTGGGAGGAGGCACCACAACCTTTAGTTCAGCCACTGTTGCTGTTGTTGGAGATGGATTCATAGCACAAGACATCACGTTTAGAAACACTGCTGGTGCAGCAAACCACCAAGCTGTTGCATTGCGTTCTGGATCAGACCTATCTGTATTCTATAGATGCAGTTTTGAAGGTTATCAAGATACATTATATGTGTATTCTGATAGACAATTCTATAGAGAATGTGACATATATGGCACAGTTGACTTCATCTTTGGTAATGCTGCGGTGGTGTTCCAAAACTGTAACTTATATGCAAGAAACCCTCCAAACAGAATCAACACAATCACTGCTCAAGGAAGAAGCGATCCAAACCAGAACACTGGCATTTCCATTCACAATTCAAGGGTAACTGCTGCTTCAGATTTGAGTCCTGTTCAAAGCTCAGTTAAGACGTACCTTGGAAGGCCTTGGAAACAGTATTCAAGAACAGTTTTCATGAAGAGTTATCTGGATAGTTTGATCAATGGAGAGGGTTGGTTGGAATGGAGTGGTAACTTTGCATTGAGTAGTTTGTATTATGGAGAATACATGAACACAGGACCTGGTTCTTCAACAACAAACAGGGTTAAATGGTTGGGATATCATGCTATCACAAGTGCTTCTGAAGCCTCACAATTCAGTGTTGGGAATTTCATTGCTGGAAACTCCTGGTTACCTGAAACTACTGTGCCTTTTACCTCTGGTCTTTGA 1551 0.4139 MSTFNLFITLLVFFLLSSSFVSSYSGNDVQLWCNQTPNPQPCEYFLTNSPTQQNKKINQKSDFLQLSLQLVQERALIAHANTLSLASKCRNPRETAAWTDCVELYEQTILKLNKTLDPNTKSSQVDTQTWLSTALTNLETCKAGFYELGVQDYVLSFMSNNVTQLLSNTLALNKVEYQEPSYRDWFPTWVKPGDRKLLQASSPASKANVVVAKDGSGKYTTVSAAINAAPVSSGGRYVIYVKSGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFSSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARNPPNRINTITAQGRSDPNQNTGISIHNSRVTAASDLSPVQSSVKTYLGRPWKQYSRTVFMKSYLDSLINGEGWLEWSGNFALSSLYYGEYMNTGPGSSTTNRVKWLGYHAITSASEASQFSVGNFIAGNSWLPETTVPFTSGL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01559 516 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Viun10g01559 516 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Viun10g01559 516 PANTHER PECTINESTERASE 14 508 - -
Viun10g01559 516 Gene3D - 203 516 IPR012334 -
Viun10g01559 516 FunFam Pectinesterase 202 516 - -
Viun10g01559 516 SMART PMEI_2 24 172 IPR006501 GO:0004857
Viun10g01559 516 CDD PMEI-like_3 31 174 - -
Viun10g01559 516 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Viun10g01559 516 NCBIfam pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Viun10g01559 516 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Viun10g01559 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 175 IPR035513 -
Viun10g01559 516 SUPERFAMILY Pectin lyase-like 202 515 IPR011050 -
Viun10g01559 516 SMART complete 241 419 IPR006633 -
Viun10g01559 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 175 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01559 Viun-Chr10 30741623 30743255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01559 7 516 Carbohydrate Esterase AT2G45220 66.732 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01559 K01051 - gmx:100781697 867.07