Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01557 ATGGCAGGTTTTCGTTTGCTCCTACCACTGTTCATTCCTTTCTTACTATTCTCTTTTGCTTCATGTTATTCATGGAATGACGTTAAACTTTGGTGCAACCAAACCCCAAACCCTCAACCATGTGAGTATTTCTTAGCCAATAACCCCACTTATCAGTACAAACCCATCAAGCAGAAATCTGATTTCTTCGAGCTTTCGTTGAAAATTGCCCAAGATCGTGCTCTCAAAGGCCATGCAAACACCCTCTCGCTTGGTTCAAAGTGCAGAAATCCTCGTGAAACAGCTGCTTGGGCTGATTGTGTTCAGCTTTATGAGCAAACCATTCGTAAACTCAACGAAACCTTGGACCCTAACACCAAGAGCTCCCAAGTTGATGCTCAAACATGGCTCAGCACAGCTCTCACTAACCTCGAGACATGCAAAGCTGGCTTCTACGATCTTGGGGTTCAAGACTATGTTCTTCCTTTTATGTCCAACAATGTCACCAAGTTACTGAGCAACACTTTGGCACTAAACAAAGTTCAATACGAAGAACCCAGTTACAAAGATGGGTTTCCAACATGGGTGAAGCCAGGTGATAGGAAATTGTTGCAATCTTCTTCTCCAGCTTCTAGGGCCAGTGTAGTGGTGGCAAAAGATGGGTCTGGAAAGTACAGAACGGTGAGTGCAGCCATAAATGCTGCACCAAAAAGTAGCAGTGGAAGGTATGTGATATATGTGAAGAGTGGAGTGTACAATGAACAGGTTGAGTTAAAAGCAAAGAATATAATGTTGGTGGGAGATGGTATTGGAAAAACCATTATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTTCGTTCGGCCACTGTTGCCGTTGTTGGAGATGGATTTATAGCACAAGACATCACGTTTAGAAACACTGCTGGTGCAGCAAATCACCAAGCTGTTGCATTGCGTTCTGGATCAGACTTATCAGTGTTCTACAGATGTAGTTTTGAAGGTTATCAAGATACATTATATGTTCATTCCGACAGACAATTCTACAGAGAATGTAACATTTATGGTACAGTGGATTTCATATTCGGCAATGCTGCTGTTGTGTTCCAAAATTGTAACATATTTGCGAGAAATCCTCCCAACAAAGTGAACACCATCACCGCCCAAGGTCGAACCGATCCCAACCAAAACACTGGAATTTCGATTCACAATTCTAGAGTCACAGCTGCTTCAGATTTGAAAGCAGTCCAAAACTCTGTTAAGACTTATCTTGGAAGACCTTGGAAGCAGTATTCTAGAACAGTTTTCATGAAGACTTATCTTGATGGTTTGATCAATCCAGCAGGTTGGTTAGAATGGAGTGGTGACTTTGCATTGAACACATTATACTATGGAGAGTACATGAACACTGGTCCAGGTTCTTCTACTGCTAGAAGGGTTAAATGGAAAGGTTATCGTGTGATAACTATGGCTTCTGAGGCTTCAAAGTTCACTGTTGCTAATTTCATTGCAGGAAACACATGGTTACCTTCCACCAAAGTTCCTTTTACCTCTTCTCTTTGA 1548 0.4218 MAGFRLLLPLFIPFLLFSFASCYSWNDVKLWCNQTPNPQPCEYFLANNPTYQYKPIKQKSDFFELSLKIAQDRALKGHANTLSLGSKCRNPRETAAWADCVQLYEQTIRKLNETLDPNTKSSQVDAQTWLSTALTNLETCKAGFYDLGVQDYVLPFMSNNVTKLLSNTLALNKVQYEEPSYKDGFPTWVKPGDRKLLQSSSPASRASVVVAKDGSGKYRTVSAAINAAPKSSSGRYVIYVKSGVYNEQVELKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYRECNIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKAVQNSVKTYLGRPWKQYSRTVFMKTYLDGLINPAGWLEWSGDFALNTLYYGEYMNTGPGSSTARRVKWKGYRVITMASEASKFTVANFIAGNTWLPSTKVPFTSSL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01557 515 FunFam Pectinesterase 201 515 - -
Viun10g01557 515 FunFam Pectinesterase 23 174 - -
Viun10g01557 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Viun10g01557 515 SMART complete 240 418 IPR006633 -
Viun10g01557 515 NCBIfam pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Viun10g01557 515 Pfam Pectinesterase 208 501 IPR000070 GO:0030599|GO:0042545
Viun10g01557 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Viun10g01557 515 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Viun10g01557 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Viun10g01557 515 CDD PMEI-like_3 30 173 - -
Viun10g01557 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Viun10g01557 515 PANTHER PECTINESTERASE 18 507 - -
Viun10g01557 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Viun10g01557 515 Gene3D - 202 515 IPR012334 -
Viun10g01557 515 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Viun10g01557 515 SUPERFAMILY Pectin lyase-like 201 512 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01557 Viun-Chr10 30726273 30728110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01557 1 515 Carbohydrate Esterase AT2G45220 67.761 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01557 K01051 - gmx:100783428 938.717