Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01556 ATGGCATCATCTTCATCATCTTCATTTTCCTTAGTAATATCCTTTCTACTTGTTCCCTTTCTATTTTCCTCCATTGCTTTCTCTTACTCATTGAAAGATATTCAATCATGGTGCAACCAAACCCCTTACCCTCAACCTTGTGAGTACTACTTGACCAACCATGCCTTCAACAAACCCATCAAAAGCAAATCCGATTTTCTCAAAGTCTCCCTTGAACTTGCCCTAGAGAGAGCACAAAGGGGCCAACTAAACACCAATTCCATGGGGCCAAAGTGCCGCAACGTCCATGAAAAATCTGCATGGAACGATTGCATTCAACTCTACGAGTACACCGTTCAAAGACTCAACAAAACTCTTGACCCCTACACCAAATGCACCCAAACCGACACACAGACATGGCTCAGCACAGCCCTCACCAACCTCGAAACTTGCAGAACCGGGTTCTATGAACTTGGTGTCACAGATTACATTCTACCCTTGTTATCCAATAATGTCACAAAGTTGTTGAGCAACACCCTCTCTCTCAACAAGGATCCCAACAACCAATTCAGACCACCTAGTACCCAAGAGGGATTCCCTACATGGGTGAAACCAGGTGATAGGAAGTTGTTGCAATCATCTTCAGCAGCTTCTAAGGCTAATGTGATTGTGGCCAAAGATGGTTCTGGAAAATACACAACAGTGAAAGCTGCTGTTGATGCTGCTCCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGAGTGGAGTGTATAATGAACAAGTTGAGGTAAAATCAAAGAATATTATGTTGGTTGGAGATGGAATTGGAAAAACCATTATCACAGGCAGTAAAAGTGTTGGAGGAGGCTCCACAACATTCAATTCAGCCACTGTTGCTGCTGTGGGTGATGGATTCATTGCTCAAGACATCACATTCAGGAACACAGCAGGAGCAGCAAATCACCAAGCAGTGGCATTTCGTTCTGGCTCAGACCTCTCAGTATTCTATAGATGCAGTTTTGAGGGTTATCAAGACACATTATACGTTCATTCAGAGAGACAATTCTACAGAGAATGTGACATCTATGGCACAGTGGACTTCATCTTTGGCAACGCTGCTGTAGTTTTGCAAAATTGCAACATCTATGCCAGAACCCCTCCTCAGAAAACCATCACAGTCACCGCTCAGGGTAGAACCGACCCTAACCAAAACACTGGAATCATCGTCCACAACTCCAAGGTCACCGGCGCCTCAGGCTTCAACCCTAGTTCCATCAAATCATACCTTGGTAGGCCGTGGAAACAGTACTCAAGAACAGTGTTCATGAAGACCAATCTCGACAGTTTAATCAACCCTGCTGGTTGGATGGAATGGGACGGTAACTTTGCTTTGAACACTTTGTATTACGCAGAATATGCAAACACTGGTCCTGGCTCCAACACTGCCAATAGGGTCACTTGGAAGGGTTACCATGTTCTCACAAGTGCATCTCAGGCCACACCTTTCACTGTTGGAAACTTCATTGCTGGCAACTCTTGGATACCAAACACCGGTGTTCCTTTCACCTCTGGACTTTAG 1563 0.4459 MASSSSSSFSLVISFLLVPFLFSSIAFSYSLKDIQSWCNQTPYPQPCEYYLTNHAFNKPIKSKSDFLKVSLELALERAQRGQLNTNSMGPKCRNVHEKSAWNDCIQLYEYTVQRLNKTLDPYTKCTQTDTQTWLSTALTNLETCRTGFYELGVTDYILPLLSNNVTKLLSNTLSLNKDPNNQFRPPSTQEGFPTWVKPGDRKLLQSSSAASKANVIVAKDGSGKYTTVKAAVDAAPKSSSGRYVIYVKSGVYNEQVEVKSKNIMLVGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYARTPPQKTITVTAQGRTDPNQNTGIIVHNSKVTGASGFNPSSIKSYLGRPWKQYSRTVFMKTNLDSLINPAGWMEWDGNFALNTLYYAEYANTGPGSNTANRVTWKGYHVLTSASQATPFTVGNFIAGNSWIPNTGVPFTSGL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01556 520 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Viun10g01556 520 FunFam Pectinesterase 208 520 - -
Viun10g01556 520 NCBIfam pectinesterase inhibitor domain 7 177 IPR006501 GO:0004857
Viun10g01556 520 Gene3D - 208 520 IPR012334 -
Viun10g01556 520 Pfam Plant invertase/pectin methylesterase inhibitor 33 175 IPR006501 GO:0004857
Viun10g01556 520 SUPERFAMILY Pectin lyase-like 208 519 IPR011050 -
Viun10g01556 520 CDD PMEI-like_3 36 177 - -
Viun10g01556 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 178 IPR035513 -
Viun10g01556 520 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Viun10g01556 520 PANTHER PECTINESTERASE 18 510 - -
Viun10g01556 520 FunFam Pectinesterase 29 178 - -
Viun10g01556 520 Pfam Pectinesterase 214 506 IPR000070 GO:0030599|GO:0042545
Viun10g01556 520 SMART PMEI_2 29 175 IPR006501 GO:0004857
Viun10g01556 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 177 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01556 Viun-Chr10 30703504 30707076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01556 12 520 Carbohydrate Esterase AT2G45220 67.515 0.0 735