Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01545 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTCAGTGTTCCTTGCTCCAGTTTGTTTAAGACTGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGCCTGCTTCTTCCTTCGGCTAATCAGCTTCACCTTGGCCACACCTTCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGGAATGCACCTTCAACAAACATGGTGATGAATCAGATTCCAAACCCTAATGATTTGGTCACCGGCGCCATGCGAGGAGGGCCTGAAGAAACTCCTAAGCCTCCATCAGCTAACAGACCTCCAGAGAAGAGACAGAGAGTCCCATCTGCTTACAACCGCTTCATCAAGGATGAGATTCAACGTATCAAAGCTGGGAACCCTGATATAAGTCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCACTTTCCTCACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGATGTGCTTATCAAAGATGGGTTTTTCGCACCAGCTAATGTAGGTGTCTCTCCCTTCTAG 648 0.4877 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFTPQNLLEEIRNAPSTNMVMNQIPNPNDLVTGAMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLIKDGFFAPANVGVSPF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01545 215 CDD HMG-box_SF 133 169 - -
Viun10g01545 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Viun10g01545 215 PANTHER PROTEIN YABBY 6-RELATED 1 191 IPR006780 GO:0007275
Viun10g01545 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Viun10g01545 215 MobiDBLite consensus disorder prediction 108 134 - -
Viun10g01545 215 FunFam Axial regulator YABBY 124 196 - -
Viun10g01545 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01545 Viun-Chr10 30479987 30482679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01545 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 62.679 1.13e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun10g01545 YABBY 2.5e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01545 K25796 - gmx:100781267 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01545 10 30479987 30482679 Viun10g01545 10 30479987 30482679 ECH