Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01498 ATGCGGAGCTTCAGGATGAGAACCCTGTTGTCCCGGGTGAAGAGGAAAACAAAGAAAACTACCAGAAACCGAAAAACAACCACAGGAAACTGCATTTCAATATCAAAAGAGTTAGCACGTCTAGTGGAACAAAAACATGAAGAAGAAGAAGAAGAAGAAGTTGTTGAGGAAGGTTTCAGCATCAAAAGTTCTGCTCCATCACACACTCACGGTGTTCAGCCCTTGGGAAATCTCTATCTGAACCCCAGTTCCGTTAACTCTAGAGACACCGGCTTAGGTAATCTTCATATTCTTTCAGATGAGCTTGTTCTTGACATGCTTGGGTTTTTGGATGCTTCTTCCTTAGGGGTTTTGAGCGCTGTGAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCCTTTGGAAGAATCTCGTGTTGGAGAACTTTCTATCTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACCTATGTATCTGCCTGTTACCCTTCATTTGCTAACTCTGCTATTGCTCTCCGGGGTTTCAAAGTTAGAGACTTTTACTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGAAAGAGGGGAATTTCGGTTGAGGAGTTTGTGTTGAATTTTGAGGAGCCTAATAGACCGGTGTTGTTGGAAGGGTGTATTGATAATTGGAGTGCATTGGGAAATTGGGATAGGGATTATTTGGTAAGATTGAGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGATTACTTTGGGTACTCAGATCAAGTTAGAGAGGAAAGGCCTCTGTATTTGTTTGATCCTAAGTTTGCTGAAAAGGTTCCAAAATTAGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAAGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCAGACTACAGGTGGATTATTATTGGACCTGCAGGGTCTGGATCCTCTTTCCATGTTGATCCAAATTCAACCTCAGCTTGGAATGCAGTGATCAAAGGATCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCACCTGGTGTTCATCCTAGTCCTGATGGGGCTGATGTTGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTGGAAAAAGAAACCAATTGAGTGTGTGTGTAAAGCTGGAGAGGTCATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATCGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAAGGTCTTGGATTTTCTTAAAAGGCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTATGATAAGTTTAAGAATGCCATTGAGGCTTCTTTTCCAGGAGAAATTGATGAACTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAAAGGAAACTTTGCTTTTGGGATTCTGTCACAGATGCTAATGCAGGAGCTTTCAAGTTTTCTTTCTAG 1551 0.4223 MRSFRMRTLLSRVKRKTKKTTRNRKTTTGNCISISKELARLVEQKHEEEEEEEVVEEGFSIKSSAPSHTHGVQPLGNLYLNPSSVNSRDTGLGNLHILSDELVLDMLGFLDASSLGVLSAVSKSFYVFTNHEPLWKNLVLENFLSGFQYKGSWKSTYVSACYPSFANSAIALRGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNRPVLLEGCIDNWSALGNWDRDYLVRLSGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWKKKPIECVCKAGEVIFVPSGWWHLVINLEESIAITQNYVSRRNLVKVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEEERKIQQRKLCFWDSVTDANAGAFKFSF 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01498 516 ProSiteProfiles F-box domain profile. 92 138 IPR001810 GO:0005515
Viun10g01498 516 ProSiteProfiles JmjC domain profile. 291 451 IPR003347 -
Viun10g01498 516 SUPERFAMILY Clavaminate synthase-like 208 449 - -
Viun10g01498 516 SMART cupin_9 282 451 IPR003347 -
Viun10g01498 516 Coils Coil 31 51 - -
Viun10g01498 516 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 92 514 - -
Viun10g01498 516 Gene3D Cupin 187 436 - -
Viun10g01498 516 SMART fbox_2 98 138 IPR001810 GO:0005515
Viun10g01498 516 Pfam Cupin-like domain 216 434 IPR041667 -
Viun10g01498 516 Gene3D - 86 163 - -
Viun10g01498 516 FunFam F-box protein At1g78280 186 436 - -
Viun10g01498 516 SUPERFAMILY F-box domain 87 159 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01498 Viun-Chr10 29435650 29438509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01498 86 440 Glycosyltransferase AT1G78280 39.286 8.53e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun10g01498 Cupin_8 2.4e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01498 - - gmx:100782241 925.235