Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01489 ATGGAGAAGCACAGGTGCAAGCTTTGCTTGAGGAGTTTCGCCAATGGAAGAGCTTTAGGAGGTCACATGCGGTCTCACATGATGAACCTACCTCTTCCTCCCAAAGAGAGCGAGTTCGTCCCGGTTCAACTCAGTTTTGAGGCCGACTCATCTCCTTCTCAGTCCTCTTCTTCCTTCTACGGTCTCCGAGAGAATCCCAAGAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCGTTCGCAGCAGAAACGGGTTCTGTGATCCTCCAAGATAGAGAGAGCGAGACGGAGTCATCCAAGAACCCAACTCGAAAACGATCCAAGAGGGCGTGGCAACTCGGAGAGCCCCCGAAAAAGATGAAACTCTGTGGGAACAATAACAAGAACGAATCTGCGAGTTCTGCTTCCGATACCACCGCGGAAGAAGCCGTAGCATTTTGTCTAATGATGCTGTCGCGTGACAGATGGAAGAGATATGATGATCATAAAAACATACAGCAGTATGATGATGAGGTTGAAGATGATGATGATGACGATGATGATGATGAAGAAGAAGACGAAGAAGAGGATGATGAAGAAGAAGAAGAAGAAGAAAAAGATGGTTTTGAATTGGAGGAGATGAAATCTGTTAAGAGGAGTAACAAGGTGCGTGGGAGGTACAAATGCGAAACGTGTGACAAGGTGTTTCGATCTTACCAAGCACTTGGTGGGCACAGAGCGAGTCACAAGAAGATGAAGTTAAACTCTGAAACGGAGTTTCAGAAACCTGAACTTGAATCAGAGCTTGTTGTTGTGTCGGAGAAGAAAATCCATGAATGCCCGGTTTGCTTTAGAGTCTTTGGTTCGGGTCAAGCACTTGGTGGACACAAGAGAACACATGTTATAGGTTCTTCTGCAACTCACACCACTGCAACTGTAAGAACTTCTGCAACTGCTTCTGTAAAAGTTGGAGACAGTTTGATAGATCTTAATCTCCCTGCTCCGGTAGATGATGAAGAAGACATTAGCCAGTTCGATCACTCTGCTCTTTCTGATGCAGAGTTTGTCAAAGAGTGA 1053 0.4549 MEKHRCKLCLRSFANGRALGGHMRSHMMNLPLPPKESEFVPVQLSFEADSSPSQSSSSFYGLRENPKKSFRFADPEFSFAAETGSVILQDRESETESSKNPTRKRSKRAWQLGEPPKKMKLCGNNNKNESASSASDTTAEEAVAFCLMMLSRDRWKRYDDHKNIQQYDDEVEDDDDDDDDDEEEDEEEDDEEEEEEEKDGFELEEMKSVKRSNKVRGRYKCETCDKVFRSYQALGGHRASHKKMKLNSETEFQKPELESELVVVSEKKIHECPVCFRVFGSGQALGGHKRTHVIGSSATHTTATVRTSATASVKVGDSLIDLNLPAPVDDEEDISQFDHSALSDAEFVKE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01489 350 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Viun10g01489 350 MobiDBLite consensus disorder prediction 163 207 - -
Viun10g01489 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Viun10g01489 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 292 IPR013087 -
Viun10g01489 350 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
Viun10g01489 350 MobiDBLite consensus disorder prediction 123 138 - -
Viun10g01489 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Viun10g01489 350 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 349 IPR044303 GO:0006355
Viun10g01489 350 SUPERFAMILY beta-beta-alpha zinc fingers 218 292 IPR036236 -
Viun10g01489 350 Coils Coil 184 204 - -
Viun10g01489 350 MobiDBLite consensus disorder prediction 92 114 - -
Viun10g01489 350 SMART c2h2final6 4 26 IPR013087 -
Viun10g01489 350 SMART c2h2final6 270 292 IPR013087 -
Viun10g01489 350 SMART c2h2final6 219 241 IPR013087 -
Viun10g01489 350 MobiDBLite consensus disorder prediction 84 138 - -
Viun10g01489 350 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Viun10g01489 350 Gene3D Classic Zinc Finger 216 292 - -
Viun10g01489 350 Pfam C2H2-type zinc finger 270 292 - -
Viun10g01489 350 Pfam C2H2-type zinc finger 218 243 - -
Viun10g01489 350 Pfam C2H2-type zinc finger 4 27 - -
Viun10g01489 350 MobiDBLite consensus disorder prediction 169 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01489 Viun-Chr10 29321708 29323089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01489 1 332 C2H2 Transcription Factor Family AT3G60580 44.575 1.85e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun10g01489 zf-C2H2_6 2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01489 - - gmx:100776462 434.491