Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01477 ATGTTGCACGTGTTCCACCATTCAATTTCCAAGCAGAGCAAAATCTTCTATCTCAGTCAATTTCCATTTGTGTCAAATTTGACCCTTGTTCGCTCCGGACCAGAGACAGCACAAGAAGGGAAGATCCTTTTGTTTTTGTTTTGCAGAGGTTTTCATTCTTGGAAAGACTTTTGGATAGGTAATATCCATCTTCTGTGCATCCTTCCAAGCCACACAAGAGCAATGGGAATAGAGATTGTGGAGCCTAACACATGCATCAGGGGTTGCTGCACCAACCCCTCTATTCCCCTTCATCTCCCTCCAGCTTCTTATACTCTCCTCTCTCCTATTGCTCGAGGGGCTGAGAGTGTTGTTTATGAAGGGACTTTGGATGGCACGAGGGTTGCTGTGAAGAAACCCATCTTGTCAACTTCAGAAGACATTAATAAGTTTCATAAAGAATTGCAATTGCTGTGCAAGTTAGATCACCCGGGAATAGCGACATTGATTGCGGCGCATGCAAAACCGCCCAATTACATGTTTTTCTTCAAGTTATATGAATCTCGGAATCTTGCACAGAAGTTGCATGTAGAAGAGTGGATACCTACTCTCAATGATGCACTTATGATGGCAATGCAATTAGCCAAGGCTTTGCAATATCTGCATAACCTCGGGATTGTGCATAGAGATGTGAAACCGGCAAATATTCTCCTTGACAAAAGTCTTTGTCCACACCTCACAGATTTTGGTTTGGCAGAATACAAGAATGATCTTAAGGGAGTTTCTGTTCAGAATTGGAAGTCTTCTGGAAAGCCTACTGGTGGTTTCCACAAAAAGAATATGGTTGGAACACTCATTTACATGGCACCTGAAATATTAAGAAAGGAGTTACATACAGAAAAATCTGATGTATACAGTTTCGGGATATCAATCAACGAACTCCTTACTGGTGTTGTGCCGTATACAGATCTTCGTACAGAAGCTCAAGCTCACACAGTGCTTGAAATGAACTATACAGAGCAGCAACTAACAGCAGCTGTTGTTTCTTATGGATTACGGCCCGTACTTGCTACTGAGGACTTGGGTATACCGTCCAGATTATTATCAATGATTAACAACTGCTGGGAAGGAAATCCTAATAACAGACCCACTTTTGATGAAATAGTCAAGGAACTTGATTTGATTATGGAGCACTGCAAATTAAAGAAGGCAGAAGATATTTATGTCAGACCTGTTAACTTGCATGTTGATCAACCTGTGGACAAGACTGAACACCTTCAGGCTTATCAAGAGAGTTTTAGTTGGTCCACTCGTGGTGAACTTTTGACTGCCTCTAGTGCAAATAATTCTGGTTTGATAACTAGGTGTGAGTTTTATGACAAGGCTTCTGTATACCACCCAATACTGTCTTGGGGATCTTATGCTACCTGTGGGAGAAGGGAGACTATGGAGGATACACATTTCATTCTGCCCCGTATTTGTGATGAGAAGGATGTCTATGCTTTTGGCATCTTTGATGGCCATAGGGGTGCAGCTGCTGCTGAGTTTTCTTCTAGAGCTGTACCAGCTGTTTTGCAGACTTCAGGTTTTATGGGCAGTCCTGCTAATGCACTAGTGGAAGCATTCATTAGGACAGATGCTGCCTTCAGAAAAGAGCTTGATTCTTATCGCAAATCCAACAGATGTATCCAGAAGGACTGGCATCCTGGGTGTACAGCCATTGCTGCTCTTATAGTCAGAAACAAGCTATTTGTTGCTAACGTTGGTGATTGCAGGGCAATCATATGTCGTGCTGGTAATCCAATTTCCTTAAGTAAGGATCACGTTGCAAGCTGTCCTCAAGAGAGAGAACGTGTTATTCGTCAAGGGGGGCATGTACATTGGCAAGTTGACACTTGGAGGGTTGGTCTTCCTGCACTTCAGGTTACACGTTCTATTGGCGATGATGATCTGAAGCCTGCTGTCACTGCAGAACCTGAGATAACTGAAAATACCTTGTGCCCAGATGATGAGTTTCTGGTCATGGCTAGTGATGGCCTGTGGGATGTGATAAGCAGTACAGAGGTCATAAATATCATAAAAGATACTGTTAAAGAGGCTGGAATGTGTTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAAGATAACATAACAGTTATCGTTGTTTTCTTACGTCCTGTGTCCACAGCAGAGAGAATTTATTAG 2193 0.4277 MLHVFHHSISKQSKIFYLSQFPFVSNLTLVRSGPETAQEGKILLFLFCRGFHSWKDFWIGNIHLLCILPSHTRAMGIEIVEPNTCIRGCCTNPSIPLHLPPASYTLLSPIARGAESVVYEGTLDGTRVAVKKPILSTSEDINKFHKELQLLCKLDHPGIATLIAAHAKPPNYMFFFKLYESRNLAQKLHVEEWIPTLNDALMMAMQLAKALQYLHNLGIVHRDVKPANILLDKSLCPHLTDFGLAEYKNDLKGVSVQNWKSSGKPTGGFHKKNMVGTLIYMAPEILRKELHTEKSDVYSFGISINELLTGVVPYTDLRTEAQAHTVLEMNYTEQQLTAAVVSYGLRPVLATEDLGIPSRLLSMINNCWEGNPNNRPTFDEIVKELDLIMEHCKLKKAEDIYVRPVNLHVDQPVDKTEHLQAYQESFSWSTRGELLTASSANNSGLITRCEFYDKASVYHPILSWGSYATCGRRETMEDTHFILPRICDEKDVYAFGIFDGHRGAAAAEFSSRAVPAVLQTSGFMGSPANALVEAFIRTDAAFRKELDSYRKSNRCIQKDWHPGCTAIAALIVRNKLFVANVGDCRAIICRAGNPISLSKDHVASCPQERERVIRQGGHVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITENTLCPDDEFLVMASDGLWDVISSTEVINIIKDTVKEAGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01477 730 Pfam Protein kinase domain 104 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01477 730 SMART PP2C_4 453 718 IPR001932 -
Viun10g01477 730 SUPERFAMILY Protein kinase-like (PK-like) 97 412 IPR011009 -
Viun10g01477 730 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 454 724 - -
Viun10g01477 730 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 97 387 - -
Viun10g01477 730 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01477 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Viun10g01477 730 Gene3D - 454 725 IPR036457 -
Viun10g01477 730 Gene3D Transferase(Phosphotransferase) domain 1 97 417 - -
Viun10g01477 730 SUPERFAMILY PP2C-like 455 722 IPR036457 -
Viun10g01477 730 Pfam Protein phosphatase 2C 468 713 IPR001932 -
Viun10g01477 730 SMART PP2C_SIG_2 478 720 IPR001932 -
Viun10g01477 730 FunFam Protein kinase and PP2C-like domain-containing protein 94 418 - -
Viun10g01477 730 ProSiteProfiles PPM-type phosphatase domain profile. 463 720 IPR001932 -
Viun10g01477 730 CDD PP2Cc 465 720 IPR001932 -
Viun10g01477 730 ProSiteProfiles Protein kinase domain profile. 104 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01477 Viun-Chr10 29214615 29231192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01477 173 730 PP2C-type Phosphatase Gene Family AT2G40860 63.815 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Viun10g01477 Pkinase 6.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01477 - - vun:114166829 1476.84