Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01473 ATGTTCAAGTTAGATCACCCGGGAATAGCGACATTGATTGCGGCGCATGCAAAACCGCCCAATTACATGTTTTTCTTCAAGTTATATGAATCTCGGAATCTTGCACAGAAGTTTCATGTAGAAGAGTGGATACCAACTCTCAATGATGCACTTATGATGGCAATACAATTAGCCAAGGCTTTGCAATATCTGCATAACCTCGGGATTGTGCATAGAGATGTGAAACCAGCAAATATTCTCCTTGACAAAAGTCTTTGTCCACACCTCACAGATTTTGGTTTGGCAGAATACAAGAATGATCTTAAGGGAGTTTCTGTTCAGAATTGGAAGTCTTCTGGAAAGCCTACTGGTGGTTTCCACAAAAAGAATATGGTTGGAACACTCATTTACATGGCACCTGAAATATTAAGAAAGGAGTTACATACAGAAAAATCTGATGTATACAGTTTCAGGATATCAATCAACGAACTCCTTACTGGTGTTGTGCCGTATATAGATCTTCGTACAGAAGCTCAAGCTCACACAGTGCTTGAGATGAACTATACAGAGCAGCAACTAACAGCAGCTGTTGTTTCTTATGGATTACGGCCCGTACTTGCTACTGAGGACTTGGGTATACCGTCCAGATTATTATCAATGATTAACAACTGCTGGGATGGAAATCCTAATAACAGACCCACTTTTGATGAAATAGTCAAGGAACTTGATTTGATGATGGAGCACTGCAAATTAAAGAAGGCAGAAGATATTTATGTCAGACCTGTTAACTTGCATGTTGATCAACCTGTGGACAAGACTGAACACCTTCAGGCTTATCAAGAGAGTTTTAGTTGGTCCACTCGTGGTGAACTTTTGACTGCCTCTAGTGCAAATAATTCTGGTTTGATAACTAGGTGTGAGTTATATGACAAGGCTTCTGTATACCACCCAATACTGTCTTGGGGATCTTATGCTACCTGTGGGAGAAGGGAGACTATGGAGGATACACATTTCATTCTGCCCCGTATTTGTGATGAGAAGGATGTCTATGCTTTTGGCATCTTTGATGGCCATAGGGGTGCAGCTGCTGCTGAGTTTTCTTCTAGAGCTGTACCAGCTGTTTTGCAGACTTCAGGTTTTATGGGCAGTCCTGCTAATGCACTAGTGGAAGCATTCATTAGGACAGATGCTGCCTTCAGAAAAGAGCTTGATTCTTATCGCAAATCCAACAGATGTATCCAAAAGGACTGGCATCCTGGGTGTACAGCCATTGTTGCTCTTATAGTCAGAAACAAGCTATTTGTTGCTAACGTTGGTGATTGCAGGGCAATCATATGTCGTGCTGGTAATCCAATTTCCTTAAGTAAGGATCACGTTGCAAGCTGTCCTCAAGAGAGAAAACATGTTATTCGTCAAGGGGGGCATGTACATTGGCAAGTTGACACTTGGAGGGTTGGTCTTCCTACACTTCAGGTTACACGTTCTATTGGCGATGATGATCTGAAGCCTGCTGTCACTGCAGAACCTGAGATAACTGAAAATACCTTGTGCCCAGATGATGAGTTTCTGGTCATGGCTAGTGATGGCCTGTGGGATGTGATAAGCAGTACAGAGGTCATAAATATCATAAAAGATACTGTTAAAGAGCCTGGAATGTGTTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAAGATAACATAACAGTTATCGTTATTTTCTTACGTCCTGTGTCCACAGCAGAGAGAATTTATTAG 1743 0.4194 MFKLDHPGIATLIAAHAKPPNYMFFFKLYESRNLAQKFHVEEWIPTLNDALMMAIQLAKALQYLHNLGIVHRDVKPANILLDKSLCPHLTDFGLAEYKNDLKGVSVQNWKSSGKPTGGFHKKNMVGTLIYMAPEILRKELHTEKSDVYSFRISINELLTGVVPYIDLRTEAQAHTVLEMNYTEQQLTAAVVSYGLRPVLATEDLGIPSRLLSMINNCWDGNPNNRPTFDEIVKELDLMMEHCKLKKAEDIYVRPVNLHVDQPVDKTEHLQAYQESFSWSTRGELLTASSANNSGLITRCELYDKASVYHPILSWGSYATCGRRETMEDTHFILPRICDEKDVYAFGIFDGHRGAAAAEFSSRAVPAVLQTSGFMGSPANALVEAFIRTDAAFRKELDSYRKSNRCIQKDWHPGCTAIVALIVRNKLFVANVGDCRAIICRAGNPISLSKDHVASCPQERKHVIRQGGHVHWQVDTWRVGLPTLQVTRSIGDDDLKPAVTAEPEITENTLCPDDEFLVMASDGLWDVISSTEVINIIKDTVKEPGMCSKRLATEAVERGSKDNITVIVIFLRPVSTAERIY 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01473 580 CDD PP2Cc 315 570 IPR001932 -
Viun10g01473 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Viun10g01473 580 PANTHER PROTEIN PHOSPHATASE 281 568 IPR015655 GO:0004722|GO:0006470
Viun10g01473 580 SUPERFAMILY Protein kinase-like (PK-like) 1 263 IPR011009 -
Viun10g01473 580 Pfam Protein phosphatase 2C 318 563 IPR001932 -
Viun10g01473 580 SUPERFAMILY PP2C-like 306 572 IPR036457 -
Viun10g01473 580 ProSiteProfiles PPM-type phosphatase domain profile. 313 570 IPR001932 -
Viun10g01473 580 Gene3D - 304 575 IPR036457 -
Viun10g01473 580 SMART serkin_6 2 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01473 580 SMART PP2C_4 303 568 IPR001932 -
Viun10g01473 580 SMART PP2C_SIG_2 328 570 IPR001932 -
Viun10g01473 580 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 304 574 - -
Viun10g01473 580 ProSiteProfiles Protein kinase domain profile. 1 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01473 580 Pfam Protein kinase domain 3 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01473 580 Gene3D Transferase(Phosphotransferase) domain 1 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01473 Viun-Chr10 29183073 29190101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01473 23 580 PP2C-type Phosphatase Gene Family AT2G40860 62.567 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Viun10g01473 PP2C 2.7e-62 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01473 - - vun:114166829 1151.35