Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01471 ATGGCTTTGATATTGGATCAACAATCAAACTTCAAGCACTTTTGTAAGATTTGCAAGAAAGGTTTTGGCTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAGGTGGTCAAATGGATGACGATGATCAGGCTAGTGATTGGGAAGATAGGTTGGGAGGGAATGTGCCACCGAGCAACAAACGCATGTATGCTTTGAGAACAAACCCTAATAGGCTAAAGAGTTGTAGGGTATGCGAGAATTGTGGCAAGGAGTTTTTGTCGTGGAAATCTTTCCTTGAACACGGAAAATGCACCTCCGAGGATGCCGACTCCTTTGTGTCTTCTCCGGGCTCCGACGCCGATGACGGTGGCATCGGCGGCGGTGATCGGAGAGGATGCGGGTGGTCGAAGAGAAAACGGTCCTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTAGCGAATTGTTTAATAATGTTGTCGAATGGCACTGTAGATCCTCTTGCGGCCGAGCCCGAAGAATCGTGTGCATCCGCTAGCAAGGAGGAAGAACAACGGAGAAATCCCATGAATTTCATTGCACCATTGTCGTACAAAGTTAACAACAATAATAATAATAATATTCACAACATGAACAACCTGGTTGACAACAAGGCGAAAGGGATTGCCAAGGGTTTGTTCGAATGCAAAGCATGCAAGAAGGTTTTCAATTCACATCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTTAAGGGTTGTTTTGCTGCGAGACTAGACAACCTTGACGACAACCTCATGACCGAGGATGATGTAATCACACACGAAGAACTGTTCCCAACAAAATCAAACTCCACCCTCCAATTCGAGCATGGGTCCAACCCCACGTTGCCCTCTTCCTCCAAGAGAAAATCCAAAGTTCATGAATGTTCAATTTGCCATAGGAGTTTCTCTTCAGGACAAGCTCTTGGGGGACACAAAAGGTGTCATTGGATCACATCGAACGCACCCGACACATCCACGTTAACGAGATTTCAACAATTTCACGACCACTTGGATCAAATACCCAAGTTCGACACCTCTTCTGAGCCTCTTGATCTCAAGTTAGACCTTAACCTTCCTGCACCTTCCAATGACCTTGCAAGAAGGAACGTTTCTACAGAAATTTATTTGCAGCCTTGGGTTACATCGAAGGATGTTAAAGATGATAACAATAGCCAGTGTCAAAGTCTCCATCACAATAACAACGTTGTTAATGTTGATATTGACAACAACACCAACAACAACGAGGACGAGAAAAACACAAATAACCCAATGCAAAATGTGGATAACGAGACTGATAATAAGATCAAGTTGGCCAAACTAAGTGAGCTAAAAGACATGAACATTGGAGGCAGTTCTTCACCATGGTTGCAGGTGGGAATCGGTTCAGCTGCTACTGACGTCACAAATGATAACACCTGA 1488 0.4476 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEGGQMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSDADDGGIGGGDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLIMLSNGTVDPLAAEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNNNIHNMNNLVDNKAKGIAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLMTEDDVITHEELFPTKSNSTLQFEHGSNPTLPSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHDHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSTEIYLQPWVTSKDVKDDNNSQCQSLHHNNNVVNVDIDNNTNNNEDEKNTNNPMQNVDNETDNKIKLAKLSELKDMNIGGSSSPWLQVGIGSAATDVTNDNT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01471 495 MobiDBLite consensus disorder prediction 431 452 - -
Viun10g01471 495 SUPERFAMILY beta-beta-alpha zinc fingers 233 338 IPR036236 -
Viun10g01471 495 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Viun10g01471 495 PANTHER OS02G0659100 PROTEIN 2 487 - -
Viun10g01471 495 MobiDBLite consensus disorder prediction 38 59 - -
Viun10g01471 495 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Viun10g01471 495 SMART c2h2final6 234 256 IPR013087 -
Viun10g01471 495 SMART c2h2final6 13 35 IPR013087 -
Viun10g01471 495 SMART c2h2final6 316 338 IPR013087 -
Viun10g01471 495 ProSitePatterns Zinc finger C2H2 type domain signature. 318 338 IPR013087 -
Viun10g01471 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 338 IPR013087 -
Viun10g01471 495 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Viun10g01471 495 MobiDBLite consensus disorder prediction 109 129 - -
Viun10g01471 495 Gene3D Classic Zinc Finger 11 103 - -
Viun10g01471 495 MobiDBLite consensus disorder prediction 292 311 - -
Viun10g01471 495 Gene3D Classic Zinc Finger 231 338 - -
Viun10g01471 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Viun10g01471 495 MobiDBLite consensus disorder prediction 292 309 - -
Viun10g01471 495 Pfam C2H2-type zinc finger 315 340 - -
Viun10g01471 495 Pfam C2H2-type zinc finger 234 258 - -
Viun10g01471 495 Pfam C2H2-type zinc finger 13 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01471 Viun-Chr10 29170685 29172172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01471 136 381 C2H2 Transcription Factor Family AT1G02040 35.628 6.18e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun10g01471 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01471 - - gmx:100793846 811.986